Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0152 ATGAAGTTCAACCCACGTGTCTCAAGCAGCCGCCGGAAGAGCCGCAAGGCTCACTTCACCGCCCCATCCAGCGTGCGGCGCGTGTTGATGAGCGCTCCTCTCTCTCAGGATCTTCGCTCAAAGTACAACGTTCGTTCCTTACCGGTGAGAAAAGAAGATGAAGTTCAAGTCGTAAGAGGAACTTTCAAAGGACGCGAGGGCAAAGTTGTCCAAGTCTACCGTCGCAAATGGGTTATTCATATCGAACGCATTACTCGTGAGAAGGTTAATGGCACAACCGTAAATGTTGGTGTTCATCCTTCAAAAGTTGTCATTACAAAGATTCGTCTCGATAAGGATCGTAAATCGCTTCTTGATCGTAAAGCTAAGGGTCGTGCCACTTCTGATAAGGAGAAGGGTACTAAATTCGCTCCTGAGGATATTATGCAAAACATTGATTATGCCGATTCAATGACGTCGTTGACAGTAACAAAGGTTCCTATTTTCTTGTGGGATAGGATTTTGCCATTGTCGTTGATAGTAACAAAGAAAGCAGAACCAGAAATGAAAGCCATAGTGATAACCACACCAGGTGATCCTGAAGTGTTGCAGCTCCAAGAAGTAGAAGACCCTCAAATCAAAGACGATGAGGTTCTCATAAGAGTTGAAGCCACTGCTCTTAATCGAGCTGATACGGTTCAAAGGAAAGGCTCATACCCTACCCCAAAAGGTGCAAGCCCATACCCTGGACTTGAGTGTTCCGGAACTATTGAATCCGTTGGCAAAAACGTTTCTAGGTGGAAAGTTGGCGATCAGGTGTGTGCTCTTCTATCTGGAGGAGGATATGCTGAGAAAGTTGCTGTTCCTGCTGAACAAGTTCTTTCAGTTCCTCCTAGGATTTCTTTGAAGGATGCTGCTAGTTTTCCTGAGGTGGCATGCACCGTCTGGTCTACTATTTTTATGACCAGCCGGCTATCTGCCGGAGAAACTTTGTTGATTCATGGAGGTTCAAGTGGCATTGGTACGTTTGCAATTCAGATAGCTAAGTACCGAGGATCAAGAGTATTTGTTACTGCAGGTAATGAAGTGAAACTTGCTTTTTGCAAGGGTATTGGTGCTGATGTGGGCATCAATTACAAAACAGAGGACTTTGTTGCAAGGGTGAAGGAAGAAACGGGTGGTCAAGGTGTTGATGTTATTCTTGATTGTATGGGAGCATCCTACTATCAAAAAAATCTCGAGAGCTTAAATTTTGATGGAAGACTTTTTATTATCGGCTTTCAAGGCGGGGTTTCCACAGAATTTGACCTCCGACCTTTAGTTGGTAAACGTCTTACAGTACAAGGGGCTGGCCTGCGTAATAGAAGTCCTGAAAATAAAGCTTTGATCATCAATGAAGTGGAGAAGAATGTTTGGCCTGCAATTGCAGAAGGTAAGGTTAAGCCTGTGGTCTACAAAACTTTCCCTCTGTCTCAAGCCGCGGAGGGTCACCGCCTTATGGAAAGCAATCAGCATATTGGGAAGATACTGCTTTTCCCATGA 1521 0.4477 MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSQDLRSKYNVRSLPVRKEDEVQVVRGTFKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGVHPSKVVITKIRLDKDRKSLLDRKAKGRATSDKEKGTKFAPEDIMQNIDYADSMTSLTVTKVPIFLWDRILPLSLIVTKKAEPEMKAIVITTPGDPEVLQLQEVEDPQIKDDEVLIRVEATALNRADTVQRKGSYPTPKGASPYPGLECSGTIESVGKNVSRWKVGDQVCALLSGGGYAEKVAVPAEQVLSVPPRISLKDAASFPEVACTVWSTIFMTSRLSAGETLLIHGGSSGIGTFAIQIAKYRGSRVFVTAGNEVKLAFCKGIGADVGINYKTEDFVARVKEETGGQGVDVILDCMGASYYQKNLESLNFDGRLFIIGFQGGVSTEFDLRPLVGKRLTVQGAGLRNRSPENKALIINEVEKNVWPAIAEGKVKPVVYKTFPLSQAAEGHRLMESNQHIGKILLFP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0152 506 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal11g0152 506 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lal11g0152 506 MobiDBLite consensus disorder prediction 1 20 - -
Lal11g0152 506 Pfam KOW motif 53 82 IPR005824 -
Lal11g0152 506 PANTHER QUINONE OXIDOREDUCTASE PIG3 182 505 - -
Lal11g0152 506 Pfam Zinc-binding dehydrogenase 332 451 IPR013149 -
Lal11g0152 506 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Lal11g0152 506 SMART kow_9 48 75 IPR005824 -
Lal11g0152 506 Gene3D - 1 143 IPR014722 -
Lal11g0152 506 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal11g0152 506 PANTHER QUINONE OXIDOREDUCTASE PIG3-RELATED 182 505 - -
Lal11g0152 506 CDD p53_inducible_oxidoreductase 182 504 IPR014189 -
Lal11g0152 506 Pfam Alcohol dehydrogenase GroES-like domain 209 268 IPR013154 -
Lal11g0152 506 TIGRFAM quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 182 504 IPR014189 -
Lal11g0152 506 CDD KOW_RPL26 53 105 IPR041988 GO:0003723
Lal11g0152 506 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 469 IPR036291 -
Lal11g0152 506 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal11g0152 506 SUPERFAMILY GroES-like 182 320 IPR011032 -
Lal11g0152 506 Gene3D - 193 504 - -
Lal11g0152 506 SMART PKS_ER_names_mod 191 504 IPR020843 GO:0016491
Lal11g0152 506 Gene3D - 301 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0152 Lal-Chr11 996960 1002571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0152 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 83.562 2.49e-86 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0152 - - gmx:100813682 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0066 3 394932 398625 Lal11g0152 11 996960 1002571 LSH