Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal11g0150 | ATGAATGATCTATTCTCAAGCTCCTTTAAAAAATATTCTGATTTGAGGGAGCAGACACATCTTGATGATGTTGAGGCAGGGAAGGAAACAGTGAACCTTGATAAATTCTTTGAAGATGTGGAAAATGTAAAAGAAGATATGAGAGGTGTTGAAAAGCTTTATAGAAAATTGCAGGAGGCTAATGAAGAAAGCAAAATTGTTCATAATGCTAAGACCATGAAGGATCTTCGAGCTCGAATGGATAAAGATGTTGAACAAGTCCTCAAGTGTGTTAAGATCATCAAAGGAAAGCTTGAAGCATTAGAGAGATCCAATGCATCAAATAGAAAACTTCCTGGCTGTGGTCCAGGTTCTTCAGCAGATAGAACAAGAACTTCAGTTGTTAGTGGCTTGGGGAAGAAGTTAAAGGATTTGATGGATGATTTTCAAGGATTAAGAGCAAGAATGCAACTTGAATATAAGGAAACAGTGGAAAGAAGGTATTTTACAATAACAGGAGAAAAAGCAGATGAAGAAACTATAGAGAATTTAATATCAAGTGGAGAAAGTGAAAGTTTCCTTCAAAGGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGACACAATATCAGAAATTCAAGAAAGGCATGATGCTGTTAAGGAGATAGAGAAAAACTTGATTGAGTTACATCAAGTGTTTTTGGATATGGCTGCTCTTGTAGAATCTCAAGGTCAACAACTCAATAATATAGAGAGTCATGTTGCTCATGCTAGTTCATTTGTAAGAAGAGGCACAGAACAACTTCAAGAAGCAAGAGAGCATCAAAAAAGCTCTAGAAAGTGGACATGCTATGCTATAATTCTTGGCATTGTTCTCATCATTGTTATCCTATTTCCTCTGTTATCATCAATTTTACCTCACTTGATATTAAGATGA | 918 | 0.3584 | MNDLFSSSFKKYSDLREQTHLDDVEAGKETVNLDKFFEDVENVKEDMRGVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEQVLKCVKIIKGKLEALERSNASNRKLPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQLEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREHQKSSRKWTCYAIILGIVLIIVILFPLLSSILPHLILR | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal11g0150 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Lal11g0150 | 305 | Gene3D | - | 194 | 295 | - | - | |
Lal11g0150 | 305 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Lal11g0150 | 305 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Lal11g0150 | 305 | PANTHER | SYNTAXIN-124-RELATED | 6 | 295 | - | - | |
Lal11g0150 | 305 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Lal11g0150 | 305 | Coils | Coil | 40 | 70 | - | - | |
Lal11g0150 | 305 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Lal11g0150 | 305 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Lal11g0150 | 305 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Lal11g0150 | 305 | PANTHER | SYNTAXIN | 6 | 295 | IPR045242 | - | |
Lal11g0150 | 305 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
Lal11g0150 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Lal11g0150 | 305 | Gene3D | - | 33 | 160 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal11g0150 | Lal-Chr11 | 992108 | 993025 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal11g0150 | 1 | 304 | SNARE and Associated Proteins | AT1G61290 | 78.618 | 0.0 | 501 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal11g0150 | K08486 | - | gmx:100818999 | 513.457 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal5g1762 | 5 | 19637627 | 19638544 | Lal11g0150 | 11 | 992108 | 993025 | LSH | |
Lal3g0063 | 3 | 383984 | 384901 | Lal11g0150 | 11 | 992108 | 993025 | LSH |