Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0149 ATGGCTTCAATTACATCTTCAAAGTTATTGTGCTTCAATCCTGACTGCAATGAATTCAAATCCGAAAGACCTAACAAAGGTTGGAGACTCCGTAACGGTGACCTAGCTCACCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACTCAAATGCTTCTGGCTGGAGGAATTGTGAGACTTGTAGGAAGCCATCTAACCCAACATGGTCACCACCTTTTTCCCTTCAAAATCGATTATCTGAGAGACTTAGAGACCTGTCTGCAAAAAGTTGGAGTCAGTTAGCTGGATCTGGGCCTGTACCATGGAAGCAAGCACCCAGTCTATTCAATTCAGTTTCTTCATCCGACCTGTGTCCAGATGTGTCCCCTCTAGTTGGATTATCAAATGGCGTTGATAAAATTTATGGCAATGAAAGGTTACTTGCCTCTTCCTTGGAGAAGAAAAATGAGGATTTGTCTGGAATATCAGTTAATTGGAGCGCTAATTTTGGTCCACGGGAAATGATGCTTATGAATGGAATGAGGAATGAAGACATATCTAGTTCATGTTTAAATATGTGTCAACAGTCTCCTTCTCTGAAGGACGATTTGCCCCTTCAACCATTTGCTCTGTCTGTACCTTATGCAACTCCAAATGAAAGAAATGGTCAAGTTGGGGTAGCTGGAAGTCATCCACAACAAACTACATCTCTTCCAGGAAAGCAATTTGGTGACACTATGCATTTAGCCCTGGACTCATCAGGTGAAACTCAGGTTCGCATTGGACGACCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGCTACAGAAAATAACCATAGACTCTACTTCTGTAATTACTCCCTTGTTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTTCCAAAAAAGTGTGCTGAGGCCTACTTCCCACCAATTTCCCACCCTGAAGGGTTGCCACTTAAAATCCTTGATGCTAAAGGAAAAGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTATGTATTAGAGGGTGTCACTCCCTGCATACAATCCATGCAGTTGCAAGCAGGTGATACAGTAACATTTAGCCGACTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTACACCCTCCGACCAGGCAATTGCCTTGAATATCAATGACAATGAAACAAATAAGATTGGAAATGGATTTTCTGAACAGGATGAGGTCGAACTGGCTGATGCTAGTTCATGGTCTAAAATTGATAAGTCAGGATACATAGCAAAAGATGCACTGGGGGGCAAATCTTCAACGAGAAAGAGAAAAAAAAGCATCTTAGGTTCAAAGAGTAAACGCCTAAGGATCGAAAATGAGGATCTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTTGCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTACTTGGGAAGCCAACAAATTTCACCACTGATAATATGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCTTAAGTGGCGTAGATTGCCTGCAAGTGCGCTTCTTTCATCAAAGTGGACGTGTTCTGATAATTCATGGGACCCAGAAAGATCTTCTTGTTCGGCTGCACAAGAGCTGACAGCAGAACAGCTTGAGAGTATGCTACCCCCTTGTAGTTCAGCTGTTTCCAAGAAAATGAAAGCAGCCAAGCAGGATCCTGATAATGTTGAAGCTTTGGAGGGACTTGACACACTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTTCCCTCATCTTCTCAGGCCACAACTAAACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGCCGTTTCCGAACCCTAATGTTACGCCGTGAGAAGAAACAATCGGAAAAAGAAGCAGAAACGACACATAAAAAGCAGAAGCACAAGCATCCTCAGCCATTACCTTCATCCGAAATTTTGCTTGATGATGACTCCTTGCCTTGTAGTAACACAGGTGATAGCAGCAGCCCAAACCAGAACAAGGAGGGAAATGACGGTTCTGATGAAGATCCTGTCCAGATAAAATCGTCTGCTTCGCCATTCAAAGGCCAAATTGACCTCAACATCCGGCCAGAGCGTGAAGAAGAGTTTTCACCACATTCAGATTCCAGTGGTATGAAGTTGCCCCATGATACTAGTGATATGCATCTCAAGCAGCAGACTATATTTAACTCTAGTACCGGAGACACATCTGGAAGCCAATCACAGAAGGTTGGAGATGGAGTGAAGGATGAGAAACTTAGCAATGGTGTATCCCATGGCAGTAGTAGTGATAATAATGCTGATAAGTAA 2535 0.4438 MASITSSKLLCFNPDCNEFKSERPNKGWRLRNGDLAHLCDRCGSAFEEGRFCDIFHSNASGWRNCETCRKPSNPTWSPPFSLQNRLSERLRDLSAKSWSQLAGSGPVPWKQAPSLFNSVSSSDLCPDVSPLVGLSNGVDKIYGNERLLASSLEKKNEDLSGISVNWSANFGPREMMLMNGMRNEDISSSCLNMCQQSPSLKDDLPLQPFALSVPYATPNERNGQVGVAGSHPQQTTSLPGKQFGDTMHLALDSSGETQVRIGRPRADARGRNQLLPRYWPRCTDLELQKITIDSTSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISHPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATPSDQAIALNINDNETNKIGNGFSEQDEVELADASSWSKIDKSGYIAKDALGGKSSTRKRKKSILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHVASIVVIEGFEFEEYEDAPVLGKPTNFTTDNMGEKIQWAQCEDCLKWRRLPASALLSSKWTCSDNSWDPERSSCSAAQELTAEQLESMLPPCSSAVSKKMKAAKQDPDNVEALEGLDTLANLAILGEGEALPSSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTHKKQKHKHPQPLPSSEILLDDDSLPCSNTGDSSSPNQNKEGNDGSDEDPVQIKSSASPFKGQIDLNIRPEREEEFSPHSDSSGMKLPHDTSDMHLKQQTIFNSSTGDTSGSQSQKVGDGVKDEKLSNGVSHGSSSDNNADK 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0149 844 ProSiteProfiles B3 DNA-binding domain profile. 302 403 IPR003340 GO:0003677
Lal11g0149 844 MobiDBLite consensus disorder prediction 724 743 - -
Lal11g0149 844 Pfam B3 DNA binding domain 302 401 IPR003340 GO:0003677
Lal11g0149 844 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 72 784 - -
Lal11g0149 844 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 70 - -
Lal11g0149 844 ProSiteProfiles Zinc finger CW-type profile. 536 586 IPR011124 GO:0008270
Lal11g0149 844 Pfam CW-type Zinc Finger 541 583 IPR011124 GO:0008270
Lal11g0149 844 CDD B3_DNA 300 401 IPR003340 GO:0003677
Lal11g0149 844 MobiDBLite consensus disorder prediction 768 795 - -
Lal11g0149 844 MobiDBLite consensus disorder prediction 830 844 - -
Lal11g0149 844 SMART B3_2 302 403 IPR003340 GO:0003677
Lal11g0149 844 MobiDBLite consensus disorder prediction 796 819 - -
Lal11g0149 844 Gene3D - 540 593 - -
Lal11g0149 844 Gene3D - 280 406 IPR015300 -
Lal11g0149 844 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 72 784 - -
Lal11g0149 844 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 70 - -
Lal11g0149 844 MobiDBLite consensus disorder prediction 690 706 - -
Lal11g0149 844 SUPERFAMILY DNA-binding pseudobarrel domain 299 402 IPR015300 -
Lal11g0149 844 MobiDBLite consensus disorder prediction 690 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0149 Lal-Chr11 982571 991111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0149 10 70 B3 DNA Binding Superfamily AT4G32010 46.774 1.86e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal11g0149 B3 9.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0149 - - gmx:100782114 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0062 3 373343 383169 Lal11g0149 11 982571 991111 LSH