Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0143 ATGACTGTGCCAACTGCAATTAACAATGTAACTATAGATCTTCTTTCACAACCACATTCTCTCTCTCTCAAACATTGTTTTTTACTTATATTCCATTACCGCCGGAATCTTCATCGGAATTCTCTCACCGGAAATTCAAATGGGTTTCTATCACAACAACCATTGACACCCAAAATGGAAATGACCACGCCGGAAACACCCACTGCCGGAGAATCCAATCTCCGTCGTGCCATCGACCTGATTTCCTCCCTCATTTCCATTTCTCATTCCATCAGAGTCTTCGCCGGAAAATGGCAACTGATTCGTACGAAGCTTGAAGAGCTTCATTCAGCACTGCTCGCCGCCGAGAATTCCGATTCCGGCGAGAACCCATCACTCTCCGTCACCCTCCGTTCGATTATGACCACCGCCGACGAGTGTCACTACCTCGCTCGCCGTTGCGCTGCTGTGTCCTACAGCGGGAAGTTACTGATGCAGAGTGATTTGGATGTAACGTTGGTGAAGTTAAACCACCACGTGAAGAAGCTTTCAGAGTTGTATGATACGGGTATTTTGATACGTAGCTACGCTCTTGTTGTATCAAAACCCTATCTTGGTGCTTCAAAAGAGGATATGAGGTTTTATATAAGGGACCTTTTGACGAGGATGAAGATTGGTGATGTGGGTATGAAGAAGATGGCTTTGATTAACCTTCATGAGGTTGTGGTTGAAGATGATAGGTATGTGAAGGTTATTGTCGAAGTTGGTGATGTTGTTCATATGTTGGTTGAATTTCTTGGCTCTTCTGAGGTTGTGGTTCAAGAAGAATCTGTAAAGGTGGTTGCTTTGATTGCTGGGTTTGTTGGTTCTTCATATAAAGGGGTTTTGATTGGTGCTGGGGTTATTGCTAATTTGGTTAAGGTTTTGGAATGTGGGAGTGAGGTTGGAAAAGTTGGTTCTGCTAGGTGTTTGATGAAATTGACTGAGAATTCAGATAATGCTTGGTCGGTTTCGGCTCATGGGGGTGTGAATATTTTGTTGAGGATTTGTGCTCATGTTGATTCTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTTTTGAGGAATCTCGTTGGTGTTGAAGAGATCAAGAGGTTTATGGTCGAAAAAGGCGCAGTTTCAACTTTTATCAGGCTCGTTCGATCTAAAGATGAAGCAATTCAGGTATGTGCAATTGAGTTCATTCAGAATATTGCCTTTAAAGATGATTTGGTTAGGCAAATGGTGATTAGAGAAGGTGGTGTTCGTGTTTTGTTGAGTGTTTTGGATCCTAAATTTTCTTATTCATCTAAAATCCGTGAGGTAGTAATGAGGGCTATCGAAAACTTGTGTTTTACTTCATCTACTTGTGTAACTACTTTGATGAGTTATGGATTTGTGGAACACTTGTTGTATTATGTTCGATATGGAGAGGTTTCGCTTCAAGAGTTGGCACTGAAAGTGGCATTTAGATTGTGTGGAACTTCAGAGGAGGCTAAGAAAGCACTAGGGAAGGCTGGCTTCATACCAGAACTTGTTAAGTTTCTAAATGCGAAATCATTTGAGGTTCGCGAAATGGCGGCCGAGGCACTCTCTAGCATGATTATGGTGCCTAAAAATAGAAAGAAATTTGTCGAAGAAGACCAAAACATTGCCCTTCTTCTCCGATTAATAGGCCCCGAGGAGGGAAATTCGGGTAGCAAAAAGTTCTTAATCTCAATCTTAATGTCATTAACGAATTGCAATAGTGGGAGGAAAAAGATCATCAATTCTGGTTATGTCAAGAACATAGAGAAGCTTGCAGAAAGTGATGTTTGTTCTGATGCCAAGAGACTTGTAAGGAAACTATCCACAAACCGATTCCGGAGTATCTTGTGTAGAATCTGGCACACATAA 1893 0.4205 MTVPTAINNVTIDLLSQPHSLSLKHCFLLIFHYRRNLHRNSLTGNSNGFLSQQPLTPKMEMTTPETPTAGESNLRRAIDLISSLISISHSIRVFAGKWQLIRTKLEELHSALLAAENSDSGENPSLSVTLRSIMTTADECHYLARRCAAVSYSGKLLMQSDLDVTLVKLNHHVKKLSELYDTGILIRSYALVVSKPYLGASKEDMRFYIRDLLTRMKIGDVGMKKMALINLHEVVVEDDRYVKVIVEVGDVVHMLVEFLGSSEVVVQEESVKVVALIAGFVGSSYKGVLIGAGVIANLVKVLECGSEVGKVGSARCLMKLTENSDNAWSVSAHGGVNILLRICAHVDSKGDLVGPACGVLRNLVGVEEIKRFMVEKGAVSTFIRLVRSKDEAIQVCAIEFIQNIAFKDDLVRQMVIREGGVRVLLSVLDPKFSYSSKIREVVMRAIENLCFTSSTCVTTLMSYGFVEHLLYYVRYGEVSLQELALKVAFRLCGTSEEAKKALGKAGFIPELVKFLNAKSFEVREMAAEALSSMIMVPKNRKKFVEEDQNIALLLRLIGPEEGNSGSKKFLISILMSLTNCNSGRKKIINSGYVKNIEKLAESDVCSDAKRLVRKLSTNRFRSILCRIWHT 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0143 630 SUPERFAMILY ARM repeat 210 612 IPR016024 -
Lal11g0143 630 Pfam Armadillo/beta-catenin-like repeat 496 532 IPR000225 GO:0005515
Lal11g0143 630 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 62 629 - -
Lal11g0143 630 SMART arm_5 323 365 IPR000225 GO:0005515
Lal11g0143 630 SMART arm_5 495 535 IPR000225 GO:0005515
Lal11g0143 630 SMART arm_5 238 279 IPR000225 GO:0005515
Lal11g0143 630 SMART arm_5 366 406 IPR000225 GO:0005515
Lal11g0143 630 SMART arm_5 408 451 IPR000225 GO:0005515
Lal11g0143 630 Gene3D - 208 619 IPR011989 -
Lal11g0143 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 378 IPR000225 GO:0005515
Lal11g0143 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 420 IPR000225 GO:0005515
Lal11g0143 630 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 62 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0143 Lal-Chr11 940970 942862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0143 255 487 U-box Gene Family AT3G54790 25.106 1.26e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0143 - - gmx:100809382 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1766 5 19683364 19685082 Lal11g0143 11 940970 942862 LSH
Lal15g0587 15 4065029 4066768 Lal11g0143 11 940970 942862 PCT
Lal23g0978 23 11771725 11773467 Lal11g0143 11 940970 942862 PCT
Lal11g0143 11 940970 942862 Lal15g0587 15 4065029 4066768 PCT
Lal11g0143 11 940970 942862 Lal23g0978 23 11771725 11773467 PCT