Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0141 ATGGGTAGGGTACCTTGTTGTGAGAAGAATGGTCTTAAGAAAGGGCCATGGACACCAGAAGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGTTATGGTAACTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTCCGGCCAGATATAAAGAGAGGCCGGTTTACCTTAGAAGAGGAGGAGTCAATAATTCAGCTACATAGCATTCTTGGCAATAAGTGGTCTGCTATTGCTTCACACTTACCGGGAAGAACGGACAATGAAATCAAGAACTATTGGAACACTCATATAAGAAAAAAACTTCTGAGTATGGGAATTGATCCAGTGACACATAGTCCTAGACTTGACCTATTATACATCTCTTCCATTCTAAGCTCATCTCTCTATGCTAATTCATCACAATTCAACACCCAAGGGCTCCTTGATATACACCCTATAGAGAACACAGATCTTCTTAAATTGGCTTCCTCACTCTTATTTTCACAACAATGTGAAGACCAAAACTTGTGTCCTCAAAATGACCTATATAACCCTCAAATCCTGAACCAAAACCAAAGCCATGTCCATTATCAAAACCCGGTTCAACAAGTAGCTTACACTGAATTGGTTGAACCAAATGTGAACCCATATATATCAAACTTCAGTGACCTTAGTTCCCAACAAAATTCTTTACTAAATGATTGGCACAGAAATAATGGAACTTCTTTAAGTACTTTAACTGAGGACTATATCCCTCAACTATTATCAAGCTATAACTATAGTAATTATAGTTCTGATAATCAAAATCTCATGGATCCTCCAATGTCTGAAACTACAACCTTACATTCCAACAATAATAGCAACAACAACTTCAGCTTTGCTTCAGTTCTATCCACACCTTCTTCAAGTCCCACACAGCTAAATTCGATCACAGAGGATGAAAGAAAAAGCTATGGTAGTAGTAGTAGTAACATGTTGAAATTTGAAATCCCAGAAATTTTAGATTTTGAATGA 1038 0.3825 MGRVPCCEKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTLEEEESIIQLHSILGNKWSAIASHLPGRTDNEIKNYWNTHIRKKLLSMGIDPVTHSPRLDLLYISSILSSSLYANSSQFNTQGLLDIHPIENTDLLKLASSLLFSQQCEDQNLCPQNDLYNPQILNQNQSHVHYQNPVQQVAYTELVEPNVNPYISNFSDLSSQQNSLLNDWHRNNGTSLSTLTEDYIPQLLSSYNYSNYSSDNQNLMDPPMSETTTLHSNNNSNNNFSFASVLSTPSSSPTQLNSITEDERKSYGSSSSNMLKFEIPEILDFE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0141 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal11g0141 345 CDD SANT 69 112 IPR001005 -
Lal11g0141 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal11g0141 345 CDD SANT 16 61 IPR001005 -
Lal11g0141 345 Gene3D - 13 66 - -
Lal11g0141 345 Gene3D - 69 116 - -
Lal11g0141 345 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal11g0141 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal11g0141 345 PANTHER TRANSCRIPTION FACTOR MYB41 1 342 - -
Lal11g0141 345 MobiDBLite consensus disorder prediction 284 330 - -
Lal11g0141 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal11g0141 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal11g0141 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal11g0141 345 SMART sant 66 114 IPR001005 -
Lal11g0141 345 SMART sant 13 63 IPR001005 -
Lal11g0141 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0141 Lal-Chr11 926053 927812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0141 1 343 MYB Transcription Factor Family AT4G21440 53.039 2.21e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g0141 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0141 K09422 - gmx:778071 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0981 23 11794241 11795958 Lal11g0141 11 926053 927812 PCT
Lal11g0141 11 926053 927812 Lal23g0981 23 11794241 11795958 PCT