Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0138 ATGGCAAGAAAATCAACAGTGCAAGAAGAGGAGCCTCTGCCGGACAACCTCCGTTGCAGCCGTACCGACGGCCGGCAATGGCGGTGCCGGCGAAAAGTGATGGAAGGTCTGAAGCTTTGTGAGACTCACTACCTTCAAGGTCGTCATCGCCAGAACAAGGAGAAGGTACCTGACTCGCTCAAGCTTCAGAGAAAAACCACCACCAACAGCAGCAACAAAAACGGCGTCGTTTCGGAAAACGTTGAAATTAGGGCAAATTTGGTGAAGAAGAAGAAGAAGAAGAGGAAGCAAAATTCAGAAGATGCAAGTGGTTCTTCAGGGAAGAAAAGGAAAAACAGTGATATGCGGGTTGAATTGTTAAAGATGGTTCTGGAGAGAGAGATTGAGAAAAGTAAGAAGAATAAGAAGAAGAAAACAAAGACAAAGACAAAGAAAAATCATAGAGAGAAGAAAAGGAATGTTATGGAAGAGGAAGAAGAAGATGATGATGGTGATGATGATGAATTGTGTTATAGTGAGGGAGAGTTGAGAAAAGAATTGCCAAATGGTGTAATGGAAATTGCTCCTGCTTCTTCAATGTACAATGTGGGTTCTCATTCTGATGATAAAGTTTCGGACTTTGATCATAATAGATCACTTGCACTTACACCTCGTCGCTTCAGGTCCAAGAATGTTGATAGGAACACCTATGTTGTTCCATGTGGAAGGAACTTGAAGAAGGGTAAGAGGAAGAAGTGTCATTGGTGCAAGAGCATTGATTCATGGAATCTTATAAATTGTTCTGGCTGCCAGAAGGAGTTCTTCTGCATGGATTGCATTAAAGAACGGTATTTTGAAACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGCCGGGGAACTTGCACTTGCAAAGATTGTTTGGCAAGTCAATGCAGAGACAGTGAAAGTAAGGAATATTTGGATGGTAAAAGTGGAGTTCATCAAATATTGCATTTTCATTATTTGATATGTATGCTTCTCCCTGTACTAAAACAAATAAGTGAAGACCAACATACTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAGAGTTTCTGATATTATCATCAAGCAGGTCGAATTTGGCTGCAATGAGGAAAATTACTGCAATCGCTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGCCACAAATTAAGCCAAGGAAGCACCTCTGAAGAAATTACCTCTTCGATGTCCAAGCTGCCTGACAAAATGAACAATTGCATTGCCAGTGAAAGCCACCTTTCAGATGATAAAACCAGTTCTAGTAGCAATTTAACTGTTACTTCGATATTGCCTGAGTGGACGGCTTGTAACGGTACAGACAGTGTATCATGCCCTCCTACAGAGCTAGGTGGTTGTGGTGATAGCCACCTTGAGTTGAGATGTGTTTTTCCATTAAGTTGGATCAATGAGATGGACGTAAAGGCAGAAGAAATAGCGTGCAGTTATGACTTTCCTGAAACTTTGGATAAAAATTCAAGCTGCTTGTTGTGTAATGACAAAGATCATGAAACTAATGGATATTTGAAGTTGCAAGAAGCGGCTCAAAGAGAAGATTTGAATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAGAAGTGATCATTTAGACCACTTCCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTCAATAATACATCAAACCTCAGTTGGGATCCATTGCTAATGTTCTGCGCTTATCTTGAGAGGTGCATTACAAGATATGAGAATAATAAGGACCAACTTGAAACTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTATTTTAGTGGGTCTCTTCAATATCGGTCTCAGAAAAACACTTGGCGTGAGATGCTAAAACTAAAAGGACTGTTGTCTTCCCAGCTGTTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTAATGTTCTACCAGTTCGAGAATACATGAACCCCGTGTCTGGTCTTCTGAATGTAGCTGCAAATTTGCCACAAGGGAGTTCAAAACATGATATAGGACCATATGTCTATTTTGCATATGACTGTCTTGACAAAGAAGCTGTTTCTGTGACTAAGCTCTGTTATGACTCATATGATGTGGTTAATATTATGACACATACCACAGATGGCCCTCTGTCTTCAGAACAGCTTACTAAAATAAGAAGGCTATTGAAAAAGCACAAATCTCTATGTCAAAGGGAGTCTTCTAAAACTACTACAGACAATGCAGAAGACACGCAACAAAAAGGACTGAGAAGTATGATAAGAAACAGAAAGGACTTCTATAGGAGAGTCAATAGAACATCTTCCATATCTACTGAAGTCAGAGCAGTGGGTAGTCAGTGTTTAGATACCAATATTTCTGCAGATGGAGAATGTAGTTCGAATTCTGATACTGAAAAAGTACAAAGCTCTTCAACTCTCAATGGAGCAATTCAATGCGTCGAAATATCTCCAAATCACAATCCTGGAAATCCCCTTGAAAATACAATCAGTGGTAAAAGTGAGATGCTTACAGAGAATTATTGTGCCCAGTGGGATATCTTTCGAAGAGAAGATGTACCAAAGCTCTTAGAATACCTTAAAATATACCATGATAAATTTTCTTATATTGATGAATATCATGAGAAGATGGTTCATCCAATTCTAGATCAGAGCTTCTTTCTTGACAACACTCACAAAATGAGACTAAAAGAGGAGTTCAAAATTGAACCATGGACTTTTGAGCAACGTGTTGGTGAAGCTGTCATCATTCCCGCTGGATGTCCATACCAGATTAGAAATCCTAAGTGTTGTGTTAATGTGGTAATGGAATTTGTGTCTCCTGAGAATGTTGCTGAGTGTATCAAATTGGTTGATGAGGTCCGTCTGCTTCCGAAAGACCATAAAGCAAAAGTAGACAAGCTCGAGGTCAAGAAAATGGCCCTTAATAGCGTAAGTACAGCAATTAAAGAAATACATAAGCTTACATGCAGAACATGA 3063 0.3957 MARKSTVQEEEPLPDNLRCSRTDGRQWRCRRKVMEGLKLCETHYLQGRHRQNKEKVPDSLKLQRKTTTNSSNKNGVVSENVEIRANLVKKKKKKRKQNSEDASGSSGKKRKNSDMRVELLKMVLEREIEKSKKNKKKKTKTKTKKNHREKKRNVMEEEEEDDDGDDDELCYSEGELRKELPNGVMEIAPASSMYNVGSHSDDKVSDFDHNRSLALTPRRFRSKNVDRNTYVVPCGRNLKKGKRKKCHWCKSIDSWNLINCSGCQKEFFCMDCIKERYFETQNEVKMACPVCRGTCTCKDCLASQCRDSESKEYLDGKSGVHQILHFHYLICMLLPVLKQISEDQHTELETEAKIKGKRVSDIIIKQVEFGCNEENYCNRCKTPILDLHRSCLSCSYSLCLSCCHKLSQGSTSEEITSSMSKLPDKMNNCIASESHLSDDKTSSSSNLTVTSILPEWTACNGTDSVSCPPTELGGCGDSHLELRCVFPLSWINEMDVKAEEIACSYDFPETLDKNSSCLLCNDKDHETNGYLKLQEAAQREDLNDNCLFYPTVLDIRSDHLDHFQKHWGKGHPVVVRDVLNNTSNLSWDPLLMFCAYLERCITRYENNKDQLETCLDWCEVEINIRQYFSGSLQYRSQKNTWREMLKLKGLLSSQLFKEQFPAHFAEVINVLPVREYMNPVSGLLNVAANLPQGSSKHDIGPYVYFAYDCLDKEAVSVTKLCYDSYDVVNIMTHTTDGPLSSEQLTKIRRLLKKHKSLCQRESSKTTTDNAEDTQQKGLRSMIRNRKDFYRRVNRTSSISTEVRAVGSQCLDTNISADGECSSNSDTEKVQSSSTLNGAIQCVEISPNHNPGNPLENTISGKSEMLTENYCAQWDIFRREDVPKLLEYLKIYHDKFSYIDEYHEKMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQRVGEAVIIPAGCPYQIRNPKCCVNVVMEFVSPENVAECIKLVDEVRLLPKDHKAKVDKLEVKKMALNSVSTAIKEIHKLTCRT 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0138 1020 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 62 79 - -
Lal11g0138 1020 Coils Coil 121 160 - -
Lal11g0138 1020 Pfam WRC 14 55 IPR014977 -
Lal11g0138 1020 Pfam JmjC domain, hydroxylase 869 966 IPR003347 -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 757 779 - -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 1 24 - -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 97 132 - -
Lal11g0138 1020 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 1019 IPR045109 GO:0032454|GO:0033169
Lal11g0138 1020 SUPERFAMILY Clavaminate synthase-like 560 1010 - -
Lal11g0138 1020 Gene3D Cupin 550 992 - -
Lal11g0138 1020 ProSiteProfiles JmjC domain profile. 679 983 IPR003347 -
Lal11g0138 1020 SMART cupin_9 660 983 IPR003347 -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 48 167 - -
Lal11g0138 1020 PANTHER PROTEIN B160 8 1019 - -
Lal11g0138 1020 MobiDBLite consensus disorder prediction 133 149 - -
Lal11g0138 1020 ProSiteProfiles Zinc finger RING-type profile. 246 292 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0138 Lal-Chr11 904992 911093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0138 14 53 GRF Transcription Factor Family AT2G36400 52.500 1.58e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal11g0138 JmjC 8.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0138 K15601 - gmx:100810673 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1768 5 19691039 19698391 Lal11g0138 11 904992 911093 LSH
Lal16g0642 16 4097593 4114184 Lal11g0138 11 904992 911093 PCT
Lal11g0138 11 904992 911093 Lal16g0642 16 4097593 4114184 PCT