Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0126 ATGGATAGTGAGGTTGTTCCTTCACACTTGAAATGTCCAATTTCACTTGAAATTATGTCTGACCCTGTCATCCTCTCTTCTGGTCACACCTTTGATCGTTCTTCTATTCAACGTTGGCTTGATTCTGGTCACCTTACTTGTCCTATTACCAAATTACCCATCCCTCTTCATTCTCCTCTTATTCCTAATCACGCTCTTCGTTCCTTGATTTCCACTTTTACCCCTACTCCTCCACTCTCCCACCACCACCACCACCCTGAAACCCTTCTCTCCTCCCTCTCCTCTCCCTCCTCCTCCCTCCACTCCAAGCTTGATTCCCTCCGCCACCTCACTCGACTCTCCAACCGTGACGCTCTCTTCCGCCGCCGTATCACCGATTCCGGCGTCGTCCCGGTTGTACTCTCTTGCGTTGATGATGACTTGCTTCGTGAGAAAGCTCTCTCACTCCTCCTTAATCTCAGTCTTGACGACGACAACAAGGTCGGACTCGTCGCCGAGGGCGTTGTCGGCCGTGTTGTCGCGGTTCTGATTAGCGGCTCTCCGGATTGTCGTGCGGTGGCTGCTACTCTGGTGACTAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGCGCGTATTCACACGCGATTGGTGCTCTTGTTTCTCTTGTTAGGAGCGGGAAAGGGAGGGAGATGAAAGAAGCTGCTACGGCGCTTTATGCGCTTTGTTCTTTTCGGGATAATCGGAGAAGAGCGGTGGAATGTGGCGCCGTGCCGGTTTTGCTTCGAAGTGTTGATTCCGGTCTCGAGAGAGCGGTGGAAGTGATTGGGCTTTTGGCCAAGTGTAAAGAAGGGAGAGAGCAGATTGGGAAATTCGATGGGTGTGTGAGGATTCTGGTTCGGGTTTTGAGGAATGGAACTTCAAGAGGGATTCAATATGCTTTACTTTCTCTCAATTCATTATGTTGTACCAGTGATGGAATTGTTGAAGAGGCCATGGAAGAAGGGGTTTTGGAAACTTGTGTAAGGTTGTTAGAGGATGATAATGATAAGATTAGGAGGAATGCGTCGATTTTGATTCAGGCCCTGCGTAGCAATAGACGCGGGGTGAATTGTTGA 1101 0.4977 MDSEVVPSHLKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHLTCPITKLPIPLHSPLIPNHALRSLISTFTPTPPLSHHHHHPETLLSSLSSPSSSLHSKLDSLRHLTRLSNRDALFRRRITDSGVVPVVLSCVDDDLLREKALSLLLNLSLDDDNKVGLVAEGVVGRVVAVLISGSPDCRAVAATLVTSLAVVEVNKATIGAYSHAIGALVSLVRSGKGREMKEAATALYALCSFRDNRRRAVECGAVPVLLRSVDSGLERAVEVIGLLAKCKEGREQIGKFDGCVRILVRVLRNGTSRGIQYALLSLNSLCCTSDGIVEEAMEEGVLETCVRLLEDDNDKIRRNASILIQALRSNRRGVNC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0126 366 CDD RING-Ubox_PUB 12 51 IPR045210 -
Lal11g0126 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Lal11g0126 366 SUPERFAMILY ARM repeat 85 360 IPR016024 -
Lal11g0126 366 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 361 - -
Lal11g0126 366 Pfam U-box domain 6 74 IPR003613 GO:0004842|GO:0016567
Lal11g0126 366 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Lal11g0126 366 Gene3D - 86 262 IPR011989 -
Lal11g0126 366 PANTHER U BOX DOMAIN-CONTAINING 5 361 - -
Lal11g0126 366 SUPERFAMILY RING/U-box 5 74 - -
Lal11g0126 366 Gene3D - 263 361 IPR011989 -
Lal11g0126 366 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0126 Lal-Chr11 837542 838642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0126 6 357 U-box Gene Family AT4G21350 60.606 2.38e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0126 - - cpap:110817969 430.639