Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0117 ATGTTTGAGGTTTGGCTTTCACTAAAAAAGAGGCTTCAATGCAAACCACATCCAAAACAAGTTCATGATCCAAGGCAAAGTAATAATGCTCAAAGAACAAAGTCAGGTAAAGTTGAAGGTTCAAATATCAAAGGTTTCATCCAAACAAGCAAGAAGCAATTAGAAAAACTAGGAAGTTTTAAAGCAAAACCCAAAGGAGGCATTGAAATCACTAGTCCAATAATAACACATGATATTTTTCTTCATAGCTCAAATGGTGAAATTAAAATTTGCCCATGTTGTCCTCAAACCAATAAAGGTTCAGATTATAGAAGAAAAATGTCATATACACCTTCAAGGATAGTTCATAATGTTGATTACAATGAAGGAAATATGTGTATGGATTATGATGGTCCTTCAATTTTGACATGTGATAAGTGTGGTGAGAAACTAAAAAATCATGTAGCTGTTGAAGCACACCATATCTCTGAACATTCAGTCACTGAACTTCAAGAAGATTCATCCAGGCAGATTGTAGAAACAATATGCGGAAAAAACTCAGCGAATTCTGAAAACATGTCAGGGGAGATTGGTTGTATATTAAAAGTACAAAACAAAGCAAAAACTCTTGAATGCTTTGAGGAATACAGAGAAATGGTTAAGAACATGGCTGAGAAGCTACAAAAGAAGCATCCGCGTTGCGTGGCCGATGGAAATGAGCTTTTAAGGTTTCATGGGACAACTATTGCATGCTCTCTTGGAAGAAATAGTTCTTATAGTTTGTGCACTTTAGACTATTGTGGTATATGCCAAATTTTAAGGCAAGGTTTCTCTCCAAACAAGGAGTTCAAAGGTTCATTAGGGGTTTACACTACTTCTACATGTGGAAAAGCCTTTGATTCTATTATGTTATGTGATGTGAGTCCATTTTTAAGAAAGTCAGTTATAGTGTGCAGAGTAATAGCTGGTAGAGTTTCTAGTAGTTTTGTTGAAGAGACTCAAGAAAAAGTTGATTCAGGGTTTGATTCTTTATCAGAAAAAATAAGTGTTCATTCAGATATTGAGGAACTCAATGTATTGAATCCCAATGCCTTGCTTCCTTGTTTTGTGTTAATCTTCAAACAACAAACAATGGCAGTTAAAAGGTTCAACTCAAGTGTAAGAAAAAGATTTTGA 1155 0.3481 MFEVWLSLKKRLQCKPHPKQVHDPRQSNNAQRTKSGKVEGSNIKGFIQTSKKQLEKLGSFKAKPKGGIEITSPIITHDIFLHSSNGEIKICPCCPQTNKGSDYRRKMSYTPSRIVHNVDYNEGNMCMDYDGPSILTCDKCGEKLKNHVAVEAHHISEHSVTELQEDSSRQIVETICGKNSANSENMSGEIGCILKVQNKAKTLECFEEYREMVKNMAEKLQKKHPRCVADGNELLRFHGTTIACSLGRNSSYSLCTLDYCGICQILRQGFSPNKEFKGSLGVYTTSTCGKAFDSIMLCDVSPFLRKSVIVCRVIAGRVSSSFVEETQEKVDSGFDSLSEKISVHSDIEELNVLNPNALLPCFVLIFKQQTMAVKRFNSSVRKRF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0117 384 MobiDBLite consensus disorder prediction 23 41 - -
Lal11g0117 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 368 - -
Lal11g0117 384 SUPERFAMILY ADP-ribosylation 164 368 - -
Lal11g0117 384 MobiDBLite consensus disorder prediction 15 41 - -
Lal11g0117 384 Coils Coil 203 223 - -
Lal11g0117 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 368 - -
Lal11g0117 384 ProSitePatterns Zinc finger C2H2 type domain signature. 137 158 IPR013087 -
Lal11g0117 384 Gene3D - 151 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0117 Lal-Chr11 786877 789336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0117 4 90 C2H2 Transcription Factor Family AT5G54630 31.532 5.83e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g0117 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0117 - - gmx:100807216 447.588