LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal11g0102	ATGGGAAGAGGAAAGATTGCAATTAGAAGGATAGAGAACATAACAAACCGTCAAGTAACTTTCTCAAAGAGAAGAAATGGATTGCTTAAGAAAGCTAAAGAATTGTCCATTTTATGTGATGCTGAAGTTGGATTGATTGTGTTTTCTAGCACTGGAAAGCTTTATGATTATGCTAGCACCAGCATGAAATCTGTGGTTGGGCGTTACAAAAAGCTAAAAGAGGTGAATCAACAGCTAATGAGTCCTGCTTTAGAAATCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCAGCAACTGCAGTACTTGCAAGAATGCCACAGGCAACTGATGGGAGAACAACTTTCTGGTTTGGGTATCAAAGAGCTGCAAAATTTGGAAAACCAACTGGAGATGAGTTTAAAGTGTGTTCGCGTGAAAAAGGATGAAATTTTGACGGACGAGGTTAAAGAACTGCACCGAAAGGGAAATCTCATTCATCAAGAAAATGTAGAACTCCATAAAAAGATGAACCTTGTCCATAAAGAAAATGCCGAGCTACAGAAGAAGTCTCCAGCTGAGCCAGTCACGGCCTCAGTACAGTCAACTACCAGCCAAAGCAATAAAACTGGGATTACAACTGCAATAGCAAAATCTGTTCAATAA	645	0.4	MGRGKIAIRRIENITNRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYASTSMKSVVGRYKKLKEVNQQLMSPALEIKFWQREAASLRQQLQYLQECHRQLMGEQLSGLGIKELQNLENQLEMSLKCVRVKKDEILTDEVKELHRKGNLIHQENVELHKKMNLVHKENAELQKKSPAEPVTASVQSTTSQSNKTGITTAIAKSVQ	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal11g0102	214	MobiDBLite	consensus disorder prediction	179	214	-	-
	Lal11g0102	214	MobiDBLite	consensus disorder prediction	187	214	-	-
	Lal11g0102	214	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	188	-	-
	Lal11g0102	214	CDD	MADS_MEF2_like	2	74	IPR033896	GO:0000977\|GO:0045944
	Lal11g0102	214	Pfam	K-box region	86	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal11g0102	214	Coils	Coil	163	183	-	-
	Lal11g0102	214	Gene3D	-	13	84	IPR036879	GO:0003677\|GO:0046983
	Lal11g0102	214	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	SUPERFAMILY	SRF-like	2	91	IPR036879	GO:0003677\|GO:0046983
	Lal11g0102	214	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal11g0102	214	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	Coils	Coil	120	140	-	-
	Lal11g0102	214	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lal11g0102	214	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	188	-	-
	Lal11g0102	214	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal11g0102	Lal-Chr11	676760	692269	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal11g0102	1	184	MADS-box Gene Family	AT2G22630	61.957	2.46e-81	240

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lal11g0102		K-box	2.2e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal11g0102	K09264		-	gmx:100805092	300.056

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal11g0102	11	676760	692269	Lal11g0102	11	676760	692269	ECH