Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0097 ATGTCCCTCACCGACTCCACCAAGAAGAAGAAGAAATCAAGCGATTCCAGCGATGATTTCATGATCAAACCCCAAACCCTAACTCCTTCAATCGACACTTCCAATTGGCCTATTCTCTTAAAAAACTATGACCGTCTCAATGTCCGTACCGGTCACTACACTCCTCTCCCTTCCGGTTACTCCCCTCTCAAACGTCCTTTACCCGAATACCTCAAATACGGTGTTATCAATCTTGACAAGCCCGCTAACCCTTCCTCTCACGAAGTTGTTGCTTGGATCAAGCGAATTATTCGTGTCGAAAAAACCGGTCACAGCGGTACCCTTGATCCTAAGGTTACTGGTAATTTAATTGTCTGCATTGACCGCGCTACGCGGTTAGTTAAGTCTCAGCAGGGTGCTGGGAAGGAATATGTTTGTATTGCTCGGCTTCATTCGGCTGTTCCCGATGTCGCGAAAGTGGCTCGTGCTCTTGAGACGCTTACTGGAGCTGTTTTCCAGCGTCCTCCGCTTATATCGGCTGTTAAGAGACAGCTTAGGATAAGGACTATTTATGAGAGTAAGTTGCTTGAGTATGATGCTGATAAGCATTTGGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACAATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTGGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGAGTGGGATCATGGGTGAGAAGGATAATATGGTAACTATGCATGATGTTATTGATGCTCAATGGGTTTATGATAATTACAGGGATGAGACTTATCTTAGGAGGGTTGTTATGCCGCTTGAGGTTTTGTTGACTAGTTATAAGAGGTTGGTTGTTAAGGATTCTGCTGTTAATGCTATATGCTATGGGGCAAAGCTCATGATTCCTGGGCTGCTGCGTTTTGAGAATGATATTGAAGTTGGTGAGGAGATTGTGCTTATGACTACTAAAGGTGAGGCTATTGCGCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCTAGGAAATGGGGTTTGGGGCCGAAGGCTTCGATGAAGAAGAAATTGATTGCTGAAGGGAAGCTTGATAAGCGTGGGAAGCCTACTGCTGATACTCCACAAGAGTGGCTTAGGAATGTTGTTTTGCCTACGGGTGGGGATAGTGTTGTTGCTCGTTTGGCTGCTGCTGCTCCTGAAGGTCAGACTGTGGGAGATGAGAAGGTTAAGAAGGGAGAAGATGGAGAAGGGCGCAAAAGAAAGAATGATGAAAGTGATGTCCTAGCTACCCCTCCTGCTAAGAAGAAGGTGAAAGCCGATCAAGATGAAGAGGCCGAAGTAGAGAAGACAGATAAGAAGAAGAAGAAAAAGAAGGATAAAGAGAATGGGGATGTGGCAGCTTCAGATGAGGAGAAAAGTGGAAAGGAGAAGAAAAAGAAGAAGGAAAAGGTTGAAGATGGTTCGCCAGCTGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGGAAAAGGTTGAAGAGGGTTCACCAGATGTGGACAAGTCTGAGAAGAAAAAAAAGAAGAAAAAAGACAAAGATAATGAAGATAATGCTGCTGAAATAACAAATGGAAAGGATGACGGGAAAGCTGATCGGAGTGAGAAGAAGCATAAGAAAAAGAAAAACAAGGATGCTGATGAAGAGTAG 1740 0.442 MSLTDSTKKKKKSSDSSDDFMIKPQTLTPSIDTSNWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRIIRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLDKRGKPTADTPQEWLRNVVLPTGGDSVVARLAAAAPEGQTVGDEKVKKGEDGEGRKRKNDESDVLATPPAKKKVKADQDEEAEVEKTDKKKKKKKDKENGDVAASDEEKSGKEKKKKKEKVEDGSPAVDKSEKKKKKKEKVEEGSPDVDKSEKKKKKKKDKDNEDNAAEITNGKDDGKADRSEKKHKKKKNKDADEE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0097 579 Gene3D PUA domain 33 364 IPR036974 GO:0003723
Lal11g0097 579 TIGRFAM unchar_dom_2: uncharacterized domain 2 274 352 IPR004521 GO:0003723
Lal11g0097 579 CDD PseudoU_synth_hDyskerin 72 254 - -
Lal11g0097 579 Pfam TruB family pseudouridylate synthase (N terminal domain) 94 210 IPR002501 GO:0006396
Lal11g0097 579 MobiDBLite consensus disorder prediction 415 579 - -
Lal11g0097 579 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 7 502 IPR004802 GO:0006396
Lal11g0097 579 SMART DKCLD_2 32 90 IPR012960 -
Lal11g0097 579 MobiDBLite consensus disorder prediction 1 18 - -
Lal11g0097 579 MobiDBLite consensus disorder prediction 423 564 - -
Lal11g0097 579 MobiDBLite consensus disorder prediction 1 24 - -
Lal11g0097 579 Pfam tRNA pseudouridylate synthase B C-terminal domain 211 277 IPR032819 -
Lal11g0097 579 SUPERFAMILY PUA domain-like 280 361 IPR015947 -
Lal11g0097 579 Pfam PUA domain 281 353 IPR002478 GO:0003723
Lal11g0097 579 SUPERFAMILY Pseudouridine synthase 33 278 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal11g0097 579 SMART pua_5 281 355 IPR002478 GO:0003723
Lal11g0097 579 TIGRFAM CBF5: putative rRNA pseudouridine synthase 40 365 IPR004802 GO:0006396
Lal11g0097 579 Gene3D Pseudouridine synthase 66 272 - -
Lal11g0097 579 Pfam DKCLD (NUC011) domain 33 90 IPR012960 -
Lal11g0097 579 ProSiteProfiles PUA domain profile. 280 355 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0097 8 457 NAC Transcription Factor Family AT3G57150 81.858 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0097 K11131 - jre:108999000 803.127