LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal11g0087	ATGATTGAGAAAGATGAATGTGAGAAATCAATGGCGAGTTACCTTATTCGCCATCACTCCGACCAACTTCGCTCCATCGCTTCTTCACCAGACTCCAACCTCCATTTCCCTCTTTTCCTCGATTTCGCTGAATTCATGGCCGATGAGCCTCACATCGCTTCCCTCCTCTTCTTTCAACCCATTACTTACTTCCAACTATTCGATGATGCTGCCCTATGGGCTCATAAGATTATCTTCTCTGAATTATTAGCAACTCACAATGATAACAATGTTGTTCAAAAGAAATTCATTCATGTTCGTGTAAACATTTTTGGTTCTCCCCTTGAATGCCCTGAGACATTTCCAAGCATAGGACGAGTACGGGTGCAGCACCGTGGAATTCTTCTCACTCTCAAAGGGACTGTCATCAGGTCTGGAGCTACCAAGATGCACGAAGGTGAAAGGAATTATATCTGCCAGAAATGCAAAAATAGCTTCACAGTTTATCCCGAGGTTGAAGCTCGAAGCTCCATACAGTTACCTTCAATTTGCCCAACTCGGAAGTCTAAACCCTGTGGAGGCACAAAATTTCAGTTTGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATCAAAATCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCAATTCCTCGTTCAATTCTTATCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGCCTCTTAACAGCAAAATGGTCTCCAGAATTGAAGGATGTGCGCTGTGATCTTGATCCTGTTTTAATAGCCAACAACATAAGGAGAACCAAGGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTGTGAAATTCAAGCAGTTTTGGGACCACTTTAAAGATGCACCTTTAAAAGGTGGGAGGAATGCTATTCTACGAGGAATTTGCCCACAAGTATTTGGTCTTTTCACTGTCAAGCTAGCTGTTGCCTTAACACTTATTGGAGGTGTGCAACATGTTGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCTCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGATCTGTTATTACCACTGGGTTAGGAAGCACCAGGGAGTGGATGTTGGAAGCTGGGGCCCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGACGAATTTGATAGTATGAGGGAACATGATAGAGCGACAATACATGAAGCCATGGAACAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTCACAACACTCAGCACTAGAACAACAGTATTTGGCGCAACAAATCCTAAAGGACATTATGATCCAGATCAACGTATCACTGAAGTAGCCCTGTCTGTCAATACAACACTCTCCGGTCCTTTAATAAGCAGATTTGATATTGTCCTCGTGCTCTTGGATACAAAGAATCCCGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCTGATAGAGCCAAGAATGATGAAGATCTAGCAAACATCTGGCCTCTTTCTACACTCAAGAGGTACATAAACTATGTTAAGGAAAATTTCAGACCTGTCCTCACAAGAGAGGCTGAAATAGTTATATCCTGCTATTATCAACTTCAAAGGAAATCTGCTACTGATAATGCAGCTAGGACTACTGTCCGAATGCTGGAAAGTTTGATACGTCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGGTTGGATGCCATCACGGCTATTTTATGCGTAGAATCCTCAATGACTACCTCAGCTATAGTGGATTGCATGGGTAATGCTCTGCATTCAAATTTTACTGAAAACCCTGATCACGAATATGCTAAGCAAGAAAAAATGATCCTAGAAAAATTGGAATCAATAGATGACTTCTCTGATATGAACATTGAAGAGTGA	1971	0.4191	MIEKDECEKSMASYLIRHHSDQLRSIASSPDSNLHFPLFLDFAEFMADEPHIASLLFFQPITYFQLFDDAALWAHKIIFSELLATHNDNNVVQKKFIHVRVNIFGSPLECPETFPSIGRVRVQHRGILLTLKGTVIRSGATKMHEGERNYICQKCKNSFTVYPEVEARSSIQLPSICPTRKSKPCGGTKFQFVENTIVCHDYQEIKIQESTQVLGVGAIPRSILIILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNIRRTKELKSEIDISDDIVVKFKQFWDHFKDAPLKGGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTREWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQRITEVALSVNTTLSGPLISRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRAKNDEDLANIWPLSTLKRYINYVKENFRPVLTREAEIVISCYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDCMGNALHSNFTENPDHEYAKQEKMILEKLESIDDFSDMNIEE	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal11g0087	656	Gene3D	-	120	248	IPR012340	-
	Lal11g0087	656	Gene3D	-	281	612	IPR027417	-
	Lal11g0087	656	PANTHER	DNA HELICASE MCM9	29	645	-	-
	Lal11g0087	656	SMART	AAA_5	348	490	IPR003593	-
	Lal11g0087	656	Pfam	MCM AAA-lid domain	525	606	IPR041562	-
	Lal11g0087	656	SMART	mcm	113	608	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	SUPERFAMILY	Nucleic acid-binding proteins	35	255	IPR012340	-
	Lal11g0087	656	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	347	362	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	393	407	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	421	434	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	476	484	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	ProSiteProfiles	MCM family domain profile.	306	502	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	Pfam	MCM OB domain	120	248	IPR033762	-
	Lal11g0087	656	Gene3D	-	144	200	-	-
	Lal11g0087	656	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	29	645	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Lal11g0087	656	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	316	616	IPR027417	-
	Lal11g0087	656	Pfam	MCM P-loop domain	309	504	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal11g0087	Lal-Chr11	567427	576871	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal11g0087	9	631	Core DNA Replication Machinery Family	AT2G14050	71.855	0.0	944

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal11g0087	K10738		-	gmx:100776255	1091.64