Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0064 ATGTCTGAAGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTACGGCAGGCTTGTTGAGGCAAAGGTGGTAGTTGACAAATTCTCCGGCCGTTCTCGCGGTTTTGGGTTTGTCACATTTGATGAGAAGAAAGCTATGGAAGAGGCTATAGATGCTATGAATGGAGTGGATTTAGATGGTCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCGAGTAGAGATAGTGGTGATCGCCACCGAGAACGTGATCGTGAGCAGGGTCGTGGTCGTGATTATGGAGGTGGTCGGGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCCAGTGAAGGTGAAAGAGGGGGAAGATATGGTGACAGGGAAAGTAGATATGGTGACAGGGAAAGTAGATATGGCGGCAGGAGTGGTGGTCCTGATAGGAATGCAGATCGTTCTTCTGGTCGGCGCAATAGGGATGGTGGTAGTCATGGAGATTCTGGCAATGATCGATATGATCGTGATCGAGCTGGCCCTTATGAGCGACGGGGATCCGGAGGCTATCATTGA 627 0.4769 MSEADEFRCFIGGLSWSTSDRKLKDTFEKYGRLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGVDLDGRTITVDRAQPQQGSSRDSGDRHRERDREQGRGRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGDRESRYGDRESRYGGRSGGPDRNADRSSGRRNRDGGSHGDSGNDRYDRDRAGPYERRGSGGYH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0064 208 MobiDBLite consensus disorder prediction 168 201 - -
Lal11g0064 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lal11g0064 208 Pfam Zinc knuckle 120 136 IPR001878 GO:0003676|GO:0008270
Lal11g0064 208 MobiDBLite consensus disorder prediction 91 109 - -
Lal11g0064 208 Gene3D - 2 116 IPR012677 -
Lal11g0064 208 MobiDBLite consensus disorder prediction 126 161 - -
Lal11g0064 208 Gene3D - 117 179 - -
Lal11g0064 208 SUPERFAMILY Retrovirus zinc finger-like domains 103 140 IPR036875 GO:0003676|GO:0008270
Lal11g0064 208 MobiDBLite consensus disorder prediction 76 208 - -
Lal11g0064 208 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Lal11g0064 208 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Lal11g0064 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lal11g0064 208 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Lal11g0064 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 177 - -
Lal11g0064 208 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lal11g0064 208 PANTHER TRANSFORMER-2-RELATED 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0064 Lal-Chr11 442229 445301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0064 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 32.895 3.57e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0064 - - lang:109329957 330.102