Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0028 TTTTCAACCACAACACCACACCATACCATATACCATACCATACCCCTCTCTCTCTCTCTCTCTCTGTTCCACCACGACGGCGATCACCACCACTCCATCACCATCACCGCTTCCTCTCTCCACATTCACATTCATAGATGTTATGTTAGCAACAAACTGCGCTGTTTCATCATCATCATCACTGCTGTTCTAATGAGCCACCAACGTGAAGCTAATTTAGTGGCGGGCGTTAATTCCAATGATAAAATTCCTAAGCTCAATTGGTTGCAACATGCAAATGCACATGAAAACTTTTCAACCCAGGCAAGGTTCTTGACCTCCAATTTTATCTACTCTTTGCCAGCAGACAACCCTTCATATCAACAAGCAAATGGTCAGAGGTTTGTACTCCAACAAAGTCAAAATATTCATAGAGCACAAGTTGAAAAGGCTTGGTTTGCTCTTTCAAGTCTACAGAATTCTAGCAGGAACTATGTCCAACCTGGGAAATCTGTTAAAGTTACTCCTAGGCATCATGATAACGGGAGAGTAAATTCCTTCCAAGGAACTTATGAGAGCGAAAAACTTAGGCATCCCATTGTCACCACAACTCCAACTGCCGTTAATCACAATTCTCGGGTTTTGGATAGTTCACCGAACAATCATATTAAGAACACGAGACAAATCAACGAGTCCACAAAATGCATAGCAGATGATGTTGATGACATATTCAAGGTAATTTACGGCACTAGTCTGGTTGATGTGAATGCATCAAACTCACTTGAACCTTTCTTACAAGGCATGCAGAAACTGGTGAGAATGTCTGGAAATTGTATTCTTTCTGATTATGTCCTTTCATTCCTCATTGTCGGTTTAGCTATTCTGAACATTGATCTTGACCAAATAGTGGAGAACTACCAGTCAACTTGCACTCCCCAGCCATCAATATCCAAGTTTCCTCCTATTACACCAACTGCAGATAAAGATGCTAGAAAGGATGATAGTTTTTTGCCGCCGGAGTTGTGCTTGGATTGTATACATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAACTCATTTGCAGGAATTGAAGGACAACTTAATTGCTATATCAAATGAACTGCTTGACAATGGTGAGAACCTCAGCTCTGCTCAGGTAGCAAAGCTTCGCCAAGATAGGTCACAGCTGAATAAGCAAATTCAGCAGCTTGAAAAATATATTCAATCCAGTAATCTTGACGAAGAAAGACAAAGGTCACATTTTTCTGCATCCATGGCACCTCCTAAATATTCCATGTATGAAACACCTCATCAAACTTTTCTCAGTAGTGGATCAAATGGATATGATGATCAGGCTTATACTGGCACCGGAACATGTGGGTCATCATTCCAGTCGGCTTATATGGGTAATGGAACAAGTGGGTCATCATTCCAGTTTCATTCATTCTCTAGTGTAGATACGTATGGCACGTCATCAGGTCCAGTGGAGAGGGAAGCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCTGGATTTTCCTTGGACCAAGAAGTTAGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGGGAGGTCATTAATGCAACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACACTTGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATTTATTGCAGGCAAATATACCCTCTTCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGATATCCTTAGGGAACTTAATTCTGATCATTGTAAATACAAGTTGTTATATGTGACACCGGAAAAGGTTGCCAGAAGTGATGCTCTTCTGCGGCAGCTAGAGAGTTTACATATTCGTGACTTGCTCGCGAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGACTTTAGGCCAGATTATCAGGGACTTGGTATATTGAAACAGAAGTTTCCAAATACTCCTGTTTTAGCATTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTCGTTAATTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTACGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGAGATTGACAAATTCATTAGAGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTTCTGAAAAATTACAGGAATGTGGACATAAATCTGCTTTTTATCATGGTAGCATGGATCCTGCACAACGTGCCTATGTACAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACGGTGGCATTTGGAATGGGTATTAACAAACCTGACGTCCGCTTTGTAATCCACCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAGTGTGGACGAGCTGGCAGAGATGGTCTGCATTCATCCTGTGTGTTATATTATAGCTACAGTGATTATATACGAGTTAAGCATATGATAACTCAAGGAGTAATAGAGCAAAATACCATGACATCTGGATACAGTCGTTCTAATACTACTAATTCTGGACGGATACTGGAAACAAACACTGAAAATCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTCGATTGCCGGCGCCTTTTGCAGCTTGTTCATTTTGGGGAGAGGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTAGTTAAGCTAACAGGACAGAAGTTCTCATCATCTCATGTACTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGATCAAGAAACAAAGGCATGAGACTGTTCGCCTTCATGGTGCTGGGAAGCATCTATCCAAGGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGGATTTTCTTAAGGAGGAGGTAAAGAAAAGTGATGTTTATGGATCAGTGTCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGAAATCTTTTCTTTGGTGGGCAGGGAATTAATATGAGATTCCCATCCTCAGCAAAAGCATCAAAGCCAGGGAAATCAGATGTAACTCCGGCTAAAGGTTCTCTGACATCTGGGAAGTTGAATCCTCCACGAGTTGACACTCTTGCACAGCCTCAAACTGAAATGGACTTGGATCTTTCATCTAAGTTATACACTGCTCTGCGGAAGTTGCGGACGGCTATTGTTAAGGAAGCTGGTGAGGGTGTCATGGCTTACCACATATTTGGTAATGCTACATTGCAGCAGATAAGCAAGAAAGTACCAAGAACAAAGACAGAACTCCTTGATATCAATGGAATTGGCAAGGCTAAAGTAAGCAAGTATGGGGACCAGTTACTGGAAACCATCGAAAACACCATAAACGAACATTACAAGTTGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGTTGATTCTGCGAAAAGGAGACGGCCATTGGTTGAAGAAGCAGAGGCAAATGGGGAGGATGATGACTTGCTGAATAGTACTGGCCGTTCAAAGAAAAGGACGGTAAAGAGACAGAATAAAAAGACAGAGATATATGATTCGGAAGAGGAAGTAGATAATAATGACTATGGATGCCTTGATGAAGAACTAGATTTTGAGAATATGGATGAAGATGCATTAAGATAA 3813 0.4094 FSTTTPHHTIYHTIPLSLSLSLFHHDGDHHHSITITASSLHIHIHRCYVSNKLRCFIIIITAVLMSHQREANLVAGVNSNDKIPKLNWLQHANAHENFSTQARFLTSNFIYSLPADNPSYQQANGQRFVLQQSQNIHRAQVEKAWFALSSLQNSSRNYVQPGKSVKVTPRHHDNGRVNSFQGTYESEKLRHPIVTTTPTAVNHNSRVLDSSPNNHIKNTRQINESTKCIADDVDDIFKVIYGTSLVDVNASNSLEPFLQGMQKLVRMSGNCILSDYVLSFLIVGLAILNIDLDQIVENYQSTCTPQPSISKFPPITPTADKDARKDDSFLPPELCLDCIHGYKLGLCPEAATHLQELKDNLIAISNELLDNGENLSSAQVAKLRQDRSQLNKQIQQLEKYIQSSNLDEERQRSHFSASMAPPKYSMYETPHQTFLSSGSNGYDDQAYTGTGTCGSSFQSAYMGNGTSGSSFQFHSFSSVDTYGTSSGPVEREAFIPKIIEVNYIEGSGDKRWSSLDFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPSSYLSANMEWTEQQDILRELNSDHCKYKLLYVTPEKVARSDALLRQLESLHIRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEEIDKFIRENHFDECGIIYCLSRMDCEKVSEKLQECGHKSAFYHGSMDPAQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLHSSCVLYYSYSDYIRVKHMITQGVIEQNTMTSGYSRSNTTNSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGERFDSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQKFSSSHVLEVYRGSLSQMIKKQRHETVRLHGAGKHLSKGEASRVLHHLVVEDFLKEEVKKSDVYGSVSSILKVNEPKVRNLFFGGQGINMRFPSSAKASKPGKSDVTPAKGSLTSGKLNPPRVDTLAQPQTEMDLDLSSKLYTALRKLRTAIVKEAGEGVMAYHIFGNATLQQISKKVPRTKTELLDINGIGKAKVSKYGDQLLETIENTINEHYKLDKNSSGSKGSVDSAKRRRPLVEEAEANGEDDDLLNSTGRSKKRTVKRQNKKTEIYDSEEEVDNNDYGCLDEELDFENMDEDALR 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0028 1270 SMART helicmild6 769 850 IPR001650 -
Lal11g0028 1270 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 174 1250 - -
Lal11g0028 1270 CDD SF2_C_RecQ 727 859 - -
Lal11g0028 1270 SMART ultradead3 532 735 IPR014001 -
Lal11g0028 1270 MobiDBLite consensus disorder prediction 1062 1092 - -
Lal11g0028 1270 Pfam DEAD/DEAH box helicase 538 706 IPR011545 GO:0003676|GO:0005524
Lal11g0028 1270 Gene3D - 950 1060 IPR036388 -
Lal11g0028 1270 SMART hrdc7 1104 1186 IPR002121 GO:0003676
Lal11g0028 1270 Pfam RQC domain 949 1066 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal11g0028 1270 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 544 719 IPR014001 -
Lal11g0028 1270 Gene3D HRDC domain 1100 1188 IPR044876 -
Lal11g0028 1270 PANTHER DNA HELICASE RECQ FAMILY MEMBER 174 1250 - -
Lal11g0028 1270 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 905 IPR001650 -
Lal11g0028 1270 SUPERFAMILY HRDC-like 1107 1181 IPR010997 GO:0000166|GO:0044237
Lal11g0028 1270 Gene3D - 500 726 IPR027417 -
Lal11g0028 1270 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 658 667 IPR002464 -
Lal11g0028 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 868 IPR027417 -
Lal11g0028 1270 SMART RQC_2 952 1063 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal11g0028 1270 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 528 1003 IPR004589 GO:0004386|GO:0006310
Lal11g0028 1270 ProSiteProfiles HRDC domain profile. 1104 1186 IPR002121 GO:0003676
Lal11g0028 1270 CDD DEXHc_RecQ 527 726 - -
Lal11g0028 1270 Pfam Helicase conserved C-terminal domain 743 849 IPR001650 -
Lal11g0028 1270 Pfam RecQ zinc-binding 861 943 IPR032284 -
Lal11g0028 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 992 IPR027417 -
Lal11g0028 1270 Coils Coil 380 407 - -
Lal11g0028 1270 MobiDBLite consensus disorder prediction 1077 1092 - -
Lal11g0028 1270 MobiDBLite consensus disorder prediction 1244 1270 - -
Lal11g0028 1270 Pfam HRDC domain 1109 1176 IPR002121 GO:0003676
Lal11g0028 1270 Gene3D - 727 946 IPR027417 -
Lal11g0028 1270 MobiDBLite consensus disorder prediction 1186 1270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0028 Lal-Chr11 190104 199260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0028 758 873 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.16e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0028 K10901 - gmx:100800006 1674.45