Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0021 ATGGCTGTACATACGAAATATCATCTTATTACTTACTCTCAAGAGCTTGTGGATGGACAGCCTATTTTTGTTTCTTCCAACTGTCTTCCCGTCAAGGCTTTGAAACTTGAACCTGCGGGCCATGCTTACCATTCTGCTGCTCTTAAACTTCTTGGTCTTGAGGAAGATAGTGGAGATGATGCTGATAATAAAAAAGTGGTTGATGAAAAGGAAAGTAGTTATCTCCCTTCATTTGATTCTTATAGTGGCAAGAGCAAGAAGAAATCTGGTTCTGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGCCTTGGCCATTTAAGATATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCTTTGAGGTTTCACCCTGACAAACAGGCTGCTCTTATTCTTGCTGAGGAAACTGAAGCCGCAAAGCAGACAAAGAAGGATGAGATTGAAACTCACTTTAAGGCAATCCAGGAATCATATGAGGTGTTGATTGATCCCGTGAAGAGAAGAATTTACGATTCCACAGATGAGTTTGATGATGAGACTCCAACTGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTTTGAGGAATGGGCGGTGGTCGGTTACTCAGCCAATTCCAACACTGGGTGATGAAAAAACACCGTTGACAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGCTGGAGGGAGTTTCCTCATGATGATGACTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAAGAGGTGGATGGAAAGGCAGAATGCGAAGCTGTCAGAAAAAGCTAGGAAGGAAGAAACTGTTCGTATACGTGCTCTTGTTGATAATGCTTATAAGAGAGATCCAAGAATTCTGAGAAGAAAGGAAGAGGAAAAGGCTGCGAAGCAAAAGAAAAAGCAGGCTAAGCACCTAGCAAAGAAGTTACAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAGGCGACGAAAAGAGGAAGAGGATAAAAAAGCTGCAGAAGTTGCTTCGCAACTGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTATTGCGGAAGGAACGTGCACGTCTTCGAACTCTTTCAGGGCCTATTTTGTCACAACATTTACTTGAAATTTCTGAGGATGATGTTGAAAAGCTTTGCATGTCACTTGCTATTGACCAGCTGAGGGGTTTGTGTGAGAAAATGGAAGGCAAACCGGTCATGGAGCAAGCAGAAGTTCTGAAAGATGCACTGGGTGGTGAGAAGGATGTGGTCCAAAAAGATAATAATAATCCGAAGCCTGCTATTCAACAAAATGGTTCAGTCAAGTCTAATGGCAGTGCTTCTTTGCTAAGCAACATCGAGAAGAAGGAGAAACCATGGAATAAAGAAGAGATTGAGCTACTGAGGAAAGGAATGCTGAAATATCCTAAAGGTACTTCACGGAGATGGGAGGTTATTTCAGAATACATTGGTACCGGAAGATCTGTTGAAGAAATTATGAAGGCAACTAAAACAGTTCTCCTCCAAAAGCCTGATTCTGCTAAAGCTTTTGATGCATTCCTTGAGAAAAGAAAGCCAGCTGCACAGATTGCATCTCCTTTGACAACCAGAGATGAGCTACTAGGGGCATCAGCTGCTGTGCAGCCTGAAAACAGGGGCTCAGCTGCCGCTGCCACAAGTAACTCGGAAGACTCTCAGAGCAACAAAAGTACTGATACTCAGAACTCCCCTGGTGCTCCTGTTACTGCAAATGGAGTTTCTTCTAGTTCAACAGAACAAGACGAGTGGTCTGCCGTACACGAGACAGCATTGGTTAAAGCTTTGAAAACATTCCCAAAGGAAACTAGCCAAAGATGGGAGCGTGTTGCAGCAGCTGTTCCCGGTAAGACTGTGAGTCAGTGCAAGAAGAAATTTGCCTCGATGAAGGAGAGTTTCAGGAACAAGAAATGTGCAGTTTAA 1977 0.431 MAVHTKYHLITYSQELVDGQPIFVSSNCLPVKALKLEPAGHAYHSAALKLLGLEEDSGDDADNKKVVDEKESSYLPSFDSYSGKSKKKSGSGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALILAEETEAAKQTKKDEIETHFKAIQESYEVLIDPVKRRIYDSTDEFDDETPTDCAPQDFFKVFGPAFLRNGRWSVTQPIPTLGDEKTPLTEVDNFYNFWYSFKSWREFPHDDDFDLEQAESRDHKRWMERQNAKLSEKARKEETVRIRALVDNAYKRDPRILRRKEEEKAAKQKKKQAKHLAKKLQEEEAARIAEEERRRKEEEDKKAAEVASQLKKVKEKEKKLLRKERARLRTLSGPILSQHLLEISEDDVEKLCMSLAIDQLRGLCEKMEGKPVMEQAEVLKDALGGEKDVVQKDNNNPKPAIQQNGSVKSNGSASLLSNIEKKEKPWNKEEIELLRKGMLKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSAKAFDAFLEKRKPAAQIASPLTTRDELLGASAAVQPENRGSAAAATSNSEDSQSNKSTDTQNSPGAPVTANGVSSSSTEQDEWSAVHETALVKALKTFPKETSQRWERVAAAVPGKTVSQCKKKFASMKESFRNKKCAV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0021 658 Coils Coil 299 371 - -
Lal11g0021 658 CDD SANT 465 507 IPR001005 -
Lal11g0021 658 SUPERFAMILY Chaperone J-domain 95 202 IPR036869 -
Lal11g0021 658 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Lal11g0021 658 Gene3D - 458 516 - -
Lal11g0021 658 Gene3D - 593 658 - -
Lal11g0021 658 ProSiteProfiles Myb-like domain profile. 458 513 IPR001005 -
Lal11g0021 658 SUPERFAMILY Homeodomain-like 458 507 IPR009057 -
Lal11g0021 658 MobiDBLite consensus disorder prediction 559 601 - -
Lal11g0021 658 Pfam DnaJ domain 97 176 IPR001623 -
Lal11g0021 658 MobiDBLite consensus disorder prediction 435 453 - -
Lal11g0021 658 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Lal11g0021 658 MobiDBLite consensus disorder prediction 430 453 - -
Lal11g0021 658 ProSiteProfiles Myb-like domain profile. 594 648 IPR001005 -
Lal11g0021 658 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 655 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Lal11g0021 658 SMART dnaj_3 96 171 IPR001623 -
Lal11g0021 658 MobiDBLite consensus disorder prediction 552 601 - -
Lal11g0021 658 CDD SANT 601 648 IPR001005 -
Lal11g0021 658 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 655 - -
Lal11g0021 658 MobiDBLite consensus disorder prediction 297 325 - -
Lal11g0021 658 SUPERFAMILY Homeodomain-like 597 647 IPR009057 -
Lal11g0021 658 PRINTS DnaJ domain signature 102 120 IPR001623 -
Lal11g0021 658 PRINTS DnaJ domain signature 120 135 IPR001623 -
Lal11g0021 658 PRINTS DnaJ domain signature 151 171 IPR001623 -
Lal11g0021 658 CDD DnaJ 97 168 IPR001623 -
Lal11g0021 658 Gene3D DnaJ domain 80 193 IPR036869 -
Lal11g0021 658 ProSiteProfiles SANT domain profile. 597 652 IPR017884 -
Lal11g0021 658 SMART sant 462 515 IPR001005 -
Lal11g0021 658 SMART sant 598 650 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0021 Lal-Chr11 157166 159142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0021 89 297 C2H2 Transcription Factor Family AT1G74250 27.419 5.61e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g0021 DnaJ 7.5e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0021 K09522 - gmx:100806665 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0013 3 88250 90208 Lal11g0021 11 157166 159142 LSH