Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal11g0020 | ATGGAACTATCAGATTTACAAAACAACAACAAGAAGAAGAAGAAGAAGAATGAAAGTATTGATGACCACCCACCTTCTCAACCTCATGTGGGCCCTCCTCTTCATATCATGGGCTCCATCAACCTTCCTTCTAATTCTTCTTCTTCTTCTTCTTCAAATTCATCTTCTCCAACAACAACAACAACAACAATCCCTCCTCAACTACCCAGATCTCAACCCCAACTATCCATCCCCAAGCGATCCACCAAGGACAGACACACCAAGGTAGACGGCCGCGGCCGCAGAATTCGAATGCCAGCCACTTGTGCCGCTAGGGTTTTCCAATTGACCAGAGAATTGGGACACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTTCACCACGCTGAACCCGCCATCATCGCCGCCACCGGTACCGGAACAATCCCCGCTAATTTCTCCACCCTCAACTTGTCGATTCGCACCAGCGGGACCACGCTCTCGGCTCCACCGTCGAAATCGGCACCGCACTCCTTTCATGGAGCGCTGGCACTCGCTCACCACAACCCTTACGAGGAAGCCTTCCACCACACAGCGATGTTAGGGTTTCAGCATCATAGCCTCTTAACCGGTGAGCCAATTCTTGGTAGCAGTGGTGGTGAGTCGAGCGAGAACTGTATGAGAAAACGGTTCAGAGACGATTTGTTTAAAGATGATGGTAACAATTCGCAAAATGAAAATGATCACGAAGGTAATGCTTCTTCACCAAAGCATTTCAAAACAAACATATCCCAACAACAAGGTGGTGTAGTTTCTTCTCTTCGCCCTTCTAATATGTTACCTGCAACTGCCATGTGGGCTGTGGGGGCCCCACCTACAACCACTACAACTCCAACTCCTCCACCTCCTGGTAGTACTATTTGGATGCTTCCTGTTGCTGGTGCTACTACTTCTGTCACTGCTGCTCCTTCTTCAGATACACATCAGATGTGGCCTTTTACCGCCTCAGGTAGCGGTGGTGGTGTGAATCCTGTGCATTTTATGCCAAGGTTTAACCTTCAAGGTGGAGGGGTTGAATTCCAAGGTGGAGGACGTGGTGGTGGTGGTGGTGGAGGAGGGGGTGCCCTACAATTGGGTTCCATGTTAATGCAGCAACAGCAACAACAACAGCAGCAGCAGCCATCTCAGCATCTTGGGTTGTCTATGTCTGAATCAAACTTGGGTATGTTAGCTGCTCTCAATGCTTATGCTAGAGCTGGTGCTGCTTTGAACATTAACTCTGATCACCAAAGTCATCATCACATGGAGCAACAGCATCACCATCAACATCAACATCAACACCATCATCAATCTCATGAGCCTGCTGATAGTGGAGAAGATGGTGGTCCTGATAGCTCTCATTGA | 1383 | 0.4902 | MELSDLQNNNKKKKKKNESIDDHPPSQPHVGPPLHIMGSINLPSNSSSSSSSNSSSPTTTTTTIPPQLPRSQPQLSIPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLHHAEPAIIAATGTGTIPANFSTLNLSIRTSGTTLSAPPSKSAPHSFHGALALAHHNPYEEAFHHTAMLGFQHHSLLTGEPILGSSGGESSENCMRKRFRDDLFKDDGNNSQNENDHEGNASSPKHFKTNISQQQGGVVSSLRPSNMLPATAMWAVGAPPTTTTTPTPPPPGSTIWMLPVAGATTSVTAAPSSDTHQMWPFTASGSGGGVNPVHFMPRFNLQGGGVEFQGGGRGGGGGGGGGALQLGSMLMQQQQQQQQQQPSQHLGLSMSESNLGMLAALNAYARAGAALNINSDHQSHHHMEQQHHHQHQHQHHHQSHEPADSGEDGGPDSSH | 460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 422 | 460 | - | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 79 | 95 | - | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 227 | 263 | - | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lal11g0020 | 460 | Pfam | TCP family transcription factor | 81 | 209 | IPR017887 | - | |
| Lal11g0020 | 460 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 26 | 447 | IPR005333 | GO:0003700 | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 227 | 248 | - | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 39 | 78 | - | - | |
| Lal11g0020 | 460 | PANTHER | TRANSCRIPTION FACTOR TCP8 | 26 | 447 | - | - | |
| Lal11g0020 | 460 | Coils | Coil | 3 | 23 | - | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Lal11g0020 | 460 | ProSiteProfiles | TCP domain profile. | 82 | 136 | IPR017887 | - | |
| Lal11g0020 | 460 | MobiDBLite | consensus disorder prediction | 249 | 263 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal11g0020 | Lal-Chr11 | 152229 | 153611 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal11g0020 | 79 | 399 | TCP Transcription Factor Family | AT1G35560 | 43.731 | 9.94e-59 | 194 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | TCP | Lal11g0020 | TCP | 2.4e-35 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal11g0020 | - | - | adu:107482753 | 367.851 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal11g0020 | 11 | 152229 | 153611 | Lal11g0020 | 11 | 152229 | 153611 | ECH |