Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0005 ATGGGTTGTATATGCTCTAAAGCAAAATCTGTCAATCATGACCATGATGAATTGCAATTTGAATTGAAGGAAGGTACAATTAATAATAGTAACAATATATCATCATCAAACTATTTTACCCTCAAATGGGTACGAGACAACAATGATGGCAATGGCAATGGCAATCCCTCTCGCTCTGTAACCACCGATGCCAATGCAAATGCAAATGCCAATGTCAATGGCAATCCCTCTCGCTCTGTAACCACCGATGCAAATGCAAATGCCAATGTCAATCATGCTACTGCTGCAATATTGATATCCACACCCGATGAACTCAAGAATGTGCCAAAACCACATATAATAGTTCACATAGCCTCCAATGTGGGTTTAGGTTTAGGGAGTGTAGGAACACAAGGACAACCTAGGATCTCAAGAGTATATAGTATGACTAAAGGAGAACGAGGAGCACAGGTTCTTGCTGGCTGGCCTTCTTGGCTCACTGCTGTCGCCGGCGAAGCCATTGGGCAAGGAACATACAGCAGTGTCTATAAGGCTCGTGATCTTGAAACAAATAGAATTGTTGCATTGAAGAAAGTTAGGTTTGCTAATATAGATCCTGAAAGTGTTCGTTTTATGGCAAGAGAAATTATTCTATTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGCAGCTTGTACCTTATTTTTGAATATATGGAGCATGACCTTGCAGGACTTGCTGCAATACCTGCCATCAAGTTTACTGAACCACAGATAAAATGTTACATGCAACAGCTGCTTCGCGGACTTGAGCATTGTCACAGTCATGGTGTAATGCACCGTGACATCAAGGGAGCAAACCTTCTGCTTGACAATAATGGAAATCTAAAGATTGGTGATTTTGGGCTTGCAACTTTGTTTCAGCCAACTCAAGGGCAGCCTTTAACTAGTCGTGTAGTGACCTTGTGGTACCGACCACCTGAGCTTTTACTTGGAGCTACAGATTATGGAGCAGCTGTTGACTTGTGGAGTGCTGGTTGTATTCTTGCAGAGATGTTTGCTGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGTTCACCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAACCTCAACAGCCTTACAAACGTGTTGTTGCTAAGGCATTCGGTGATTTCCCTTCATCAGCACTGAGCCTCTTGGAGGTCCTTCTTGCTATAGAACCCAAGGACAGAGGAACTGCATCTTTAGCACTTGTGAATGAGTTCTTCACAACAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAATTACCCACCAAGTAAGGAGTTTGATGCCAAACTTCGAGAACACGAAGCTAGAAGGAGAAGAGCAGCAAGTAAAGGACATGAACAGGAATCTGTTACAAGGAGTTTTAAAGGGTCTAAAGCTATGCCAGCACCTGACGCTAATGCTGAGCTGCAGGCATCCATAGAGAAGAGACAAGGGCAGTGTAATTCTAAATCCGTTTGTGAGAAGTTCAATCCTGCAGAGGATGGAGGTTCTGGCTTCCCTTTTGAACCTGCAAAGTCAAGAGCGCTCAATGTCTTATCTCATTCTGGAAAGTCAACGCATCTGAGCGCATATGGATCTTCACACAATGTGAATTTGAAAGAGGAAGATGCTCTTACTGGCCCTGATCATGTCTTTAAATCAAGAAATTCTGAGTTGAGAAAACAAAATTCCTACTGGCATGGTAGCACTGCACAGTTGTCAATATTTTCTAACTCAGTTGCAGCTCGAGGTGATTCACGCCTTGATATGAATGGAAACTCTAGTTTGAATTCAAAGTGGCCAGAAGATCAGTTTGGCATGGGATATAGCAATCAGGCTGATGGTGATTCCAACCAATTTCAGGATGAACACAAGTCTTCCCACAAGAAGGACCTACCTTCTGGAAAGGATCATGCCTTGTGTCTAACACTAGTATCAGAGCAAATTCTTGGCGCCTGCTTGGGCAGAGAACAACCACCACTGCTTCTGCACTCTTATGGTATCAACAAGAAGTATGGCAAGAGACATGAACAGTTGGATGCAAGAAAAGGAGGAGATTCGTATGAGACTAGAACTCAATGA 2181 0.4292 MGCICSKAKSVNHDHDELQFELKEGTINNSNNISSSNYFTLKWVRDNNDGNGNGNPSRSVTTDANANANANVNGNPSRSVTTDANANANVNHATAAILISTPDELKNVPKPHIIVHIASNVGLGLGSVGTQGQPRISRVYSMTKGERGAQVLAGWPSWLTAVAGEAIGQGTYSSVYKARDLETNRIVALKKVRFANIDPESVRFMAREIILLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLAAIPAIKFTEPQIKCYMQQLLRGLEHCHSHGVMHRDIKGANLLLDNNGNLKIGDFGLATLFQPTQGQPLTSRVVTLWYRPPELLLGATDYGAAVDLWSAGCILAEMFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVAKAFGDFPSSALSLLEVLLAIEPKDRGTASLALVNEFFTTKPLPCDPSTLPNYPPSKEFDAKLREHEARRRRAASKGHEQESVTRSFKGSKAMPAPDANAELQASIEKRQGQCNSKSVCEKFNPAEDGGSGFPFEPAKSRALNVLSHSGKSTHLSAYGSSHNVNLKEEDALTGPDHVFKSRNSELRKQNSYWHGSTAQLSIFSNSVAARGDSRLDMNGNSSLNSKWPEDQFGMGYSNQADGDSNQFQDEHKSSHKKDLPSGKDHALCLTLVSEQILGACLGREQPPLLLHSYGINKKYGKRHEQLDARKGGDSYETRTQ 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0005 726 SMART serkin_6 161 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0005 726 PANTHER KINASE CDK9, PUTATIVE-RELATED 129 636 - -
Lal11g0005 726 SUPERFAMILY Protein kinase-like (PK-like) 165 453 IPR011009 -
Lal11g0005 726 Gene3D Phosphorylase Kinase; domain 1 162 243 - -
Lal11g0005 726 MobiDBLite consensus disorder prediction 471 492 - -
Lal11g0005 726 MobiDBLite consensus disorder prediction 625 666 - -
Lal11g0005 726 ProSiteProfiles Protein kinase domain profile. 161 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0005 726 CDD STKc_CDK9_like 165 445 - -
Lal11g0005 726 MobiDBLite consensus disorder prediction 651 666 - -
Lal11g0005 726 MobiDBLite consensus disorder prediction 471 507 - -
Lal11g0005 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Lal11g0005 726 PANTHER CELL DIVISION PROTEIN KINASE 129 636 - -
Lal11g0005 726 Pfam Protein kinase domain 164 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g0005 726 Gene3D Transferase(Phosphotransferase) domain 1 244 484 - -
Lal11g0005 726 MobiDBLite consensus disorder prediction 625 650 - -
Lal11g0005 726 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0005 Lal-Chr11 61435 65516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0005 165 483 Core Cell Cycle Gene Families AT5G10270 51.045 1.84e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal11g0005 Pkinase 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0005 - - gmx:100805055 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0005 11 61435 65516 Lal11g0005 11 61435 65516 ECH
Lal3g0003 3 41060 44392 Lal11g0005 11 61435 65516 LSH