Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1306 ATGTACCATCATCAAGGAAAAAACATACATTCTTCTTCAAGAATGGCAATCCCCTCAGAGAGGCATATGTTCCTTCAAACAGGAAATGGGGGATCGAGTGATTCCGGACTTGTGCTCTCAACTGATGCTAAGCCAAGATTGAAATGGACAACAGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGACCTGACAAAGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTACAGATTAAGCAAGAACCTGCATGGACAAAGCAACAATGTGACACACAAAATTGGTGCAGCAACAGGAGAAAGACTTTCTGAAACCAATGGAACAAATCAGATGAACAAATTAAGCCTTGGACCGCAGGTGGCTAACAAAGATTTACATATTGGTGAGGCACTGCAGATGCAGATCGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTACAGCGACACTTACAGCTCCGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGCTGGAGAAAGCTCAGGATACTCTCGGTAGACAGAATTTGGGAATAGTAGGACTTGAAGCTGCAAAAGTTCAGCTATCAGATATTGTTTCCAAAGTATCATCTCAGTGCTTGAACTCAGCATTTTTGGAACTGAAGGAATTACAAGGATTTTGCCCTCAGCAAACACAACAGCCAAATGACTGCTCCATCGAAAGTTGCCTCACATCCTGCGACGGATCACAAAAGGAGCAAGACATACAAAATGGAAGAAATGCCTTAAGACACTTCAATAATGGACATGATGCATTCATGGATAGAAAGGAAAGCATAGAAGTGAATAAGAACACCTTTCTTGCCCCATTAGGCAGGAATGCAGAAAGAAGTCATGGTGTAGAAAGAAATCCTAGCAACTTGTCTATGACCATTGGACTTGAAAGAGACACAGAGAAGAGAATCAATGAAGAAGGGAGAGAATCAAAGAAGGCTGTGGATGAAAATGTTTCTCAAGATTACAGGTTGCATTCTTACTTTGCAGCACCAAGATTGGACCTAAACAGAAATACACATGGAGATAATGAAGTTGCAACACAACAACTTGACTTGAATAGACTCACCTGGAGCTGA 1155 0.4182 MYHHQGKNIHSSSRMAIPSERHMFLQTGNGGSSDSGLVLSTDAKPRLKWTTDLHARFIEAVNQLGGPDKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKIGAATGERLSETNGTNQMNKLSLGPQVANKDLHIGEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQDTLGRQNLGIVGLEAAKVQLSDIVSKVSSQCLNSAFLELKELQGFCPQQTQQPNDCSIESCLTSCDGSQKEQDIQNGRNALRHFNNGHDAFMDRKESIEVNKNTFLAPLGRNAERSHGVERNPSNLSMTIGLERDTEKRINEEGRESKKAVDENVSQDYRLHSYFAAPRLDLNRNTHGDNEVATQQLDLNRLTWS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1306 384 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Lal10g1306 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 383 IPR044848 GO:0003700
Lal10g1306 384 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Lal10g1306 384 MobiDBLite consensus disorder prediction 323 343 - -
Lal10g1306 384 Pfam MYB-CC type transfactor, LHEQLE motif 145 190 IPR025756 -
Lal10g1306 384 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Lal10g1306 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Lal10g1306 384 Gene3D - 43 101 - -
Lal10g1306 384 PANTHER MYB-RELATED PROTEIN 2 2 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1306 Lal-Chr10 19057557 19061941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1306 76 383 G2-like Transcription Factor Family AT3G04030 50.904 5.79e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal10g1306 Myb_DNA-binding 6.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1306 - - gmx:100810396 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1306 10 19057557 19061941 Lal2g0350 2 2107672 2110521 PCT
Lal10g1306 10 19057557 19061941 Lal9g0330 9 2206433 2209255 PCT
Lal2g0350 2 2107672 2110521 Lal10g1306 10 19057557 19061941 PCT
Lal9g0330 9 2206433 2209255 Lal10g1306 10 19057557 19061941 PCT