Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1301 ATGCAATTTCTCTTCAATTCTATCTCCGATCTTCTTCCCAAATTTGAATCAATGGAACTCCATTCCTCTCCACTCCCTCTCGATTCCACGCCTGAACGAGGACAGCGCCTCCCTGATCCACCTTCTTCCTCCGTCGGATCTCCGCTTCACCATAATCCTGTTGCTGGACCCAGGCTCGCTCCCAATTATACACTTGTCAATGCAATTTTGGAGAAGAAGGAGGACGGGCCAGGTCCACGGTGTGGTCACACGCTAACGGCAGTGGCGGCTGTTGGAGAGCCGGGGACGCCTGGGTACATTGGTCCCAGGCTGATTCTGTTTGGTGGTGCAACGGCACTTGAAGGCAATTCCGCGGCTTCAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGATGTTCACTCTTATGATGTCTTGACTAATAAATGGTCTAGGCTAACTCCTTTTGGAGAACCTCCAACTCCAAGGGCTGCACATGTGGCGACTGCTGTGGGAACCATGGTGGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCCCGATGGCATAGAGTGTCAGTTCAAGGCCCAGGACCGGGGTCACGTTATGGACATGTAATGGCTCTGGTTGGGCAGAGGTATCTTATGGCAATTGGAGGCAATGATGGGAAGAGACCTTTGGCTGATGTATGGGCTCTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGACGGACTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCAAGTGCATACGGACTTGCTAAGCATAGAGATGGACGCTGGGAATGGGCAATTGCCCCGGGTGTCTCACCATCTTCCAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTCCATGTGTCTGGTGGGGCTCTAGGTGGAGGTCGAATGGTAGAAGACTCGTCAAGTGTTGCTGTATTGGACACTGCTGCTGGTGTTTGGTGTGACACAAAATCTGTTGTTACAAGTCCAAGAACTGGTAGGTACAGTGCTGATGCTGCCGGAGGAGATGCCGCAGTTGAGTTGACCCGACGTTGTAGGCATGCAGCTGCTGCTGTTGGTGACCTAATTTTCATTTATGGTGGTTTACGTGGGGGAGTCTTACTAGATGACCTACTTGTTGCTGAGGATCTTGCTGCTGCTGAAACAACAACTGCTGCTTTACATGCTGCTGCCGCAGCAGCCACAATTAATGATCAAGAAGGACACTTACCTGGACGGTATGGATTTCTTGATGATAGAAGTAGGCAAAGCATGCCTGAAGCTGATGCTGCTGCTGATGGTGCTGTTATTTTGGGAAATCCGGTTGCTCCCCCATTGAATGGCGACATTCATACTGATATCAGCACAGAGAATGCTATGCTTCAGGGATCCCGCCGTACTAGCAAAGGAGTTGAATATCTGGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTCGAACACTTGCTGCTGCCAAGGCACGACAAGAGAATGGAGAAGTCGAATTGCCTGACAGAGACCGCGGAGCTGAGGCTACCCCAAGTGGAAAAGAAATACCTTCCTTGGTTAAGCCTGATGCTGTGGGGACTAACAATGTTATTCCCGGTGGAGTTCGCTTGCATCACAGAGCTGTAGTGGTTGCTGCAGAGACTGGTGGAACTTTAGGTGGCATGGTTAGACAACTTTCAATTGACCAGTTTGAAAATGAAGGCAGGCGGGTTAGTTATGGTACTCTAGAGAATGCAACTGCTGCTAGAAAATTATTTGATCGGCAGATGTCTATCAATAGTGTGCCAAAAAAGGTCATAGCACACCTCTTAAAGCCTCGTGGGTGGAAACCACCAGTTCGACGTCAGTTTTTCTTAGATTGCAATGAAATTGCTGATCTTTGTGATAGTGTTGAGCGGATATTTTCAAGTGAACCAACTGTCTTACAACTTAGGGCTCCAATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTTATGCGCCTCTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATAGCATACATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGGCAACACAGCTTGGAAACTATAATCCTTCTTCTTTCTCTGAAGGTTGAGTATCCAAAAAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCATCGGATAAACCGTCTGTTCAATTGGCTTCCTCTGGCAGCCCTCATTGAAAAAAAAATTATATGCATGCATGGTGGTATTGGCCGTTCAATAAATCACGTGGAACAGATTGAGAACATTCAGCGTCCAATTCCAATGGAAGCAGGATCAATTGTGCTTATGGATCTTTTGTGGTCTGACCCGACTGAGAATGACAGTGTAGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGGTTAGTTACATTTGGGCCTGATCGTGTCATGGAATTTTGTAACAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCTGCTACAAATTATTGTGGTACTGCAAATAATGCTGGAGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCTAAACTGATTCATCCATTGCCACCTGCATCTTCGCCAGAAACGTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGGCCACCAACACCAACTAGAGGCCGTCCCCAAGCAACAAATGATAGAGGTTCACTGGCATGGATATAG 2988 0.4759 MQFLFNSISDLLPKFESMELHSSPLPLDSTPERGQRLPDPPSSSVGSPLHHNPVAGPRLAPNYTLVNAILEKKEDGPGPRCGHTLTAVAAVGEPGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHSYDVLTNKWSRLTPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGSRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAALHAAAAAATINDQEGHLPGRYGFLDDRSRQSMPEADAAADGAVILGNPVAPPLNGDIHTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISRTLAAAKARQENGEVELPDRDRGAEATPSGKEIPSLVKPDAVGTNNVIPGGVRLHHRAVVVAAETGGTLGGMVRQLSIDQFENEGRRVSYGTLENATAARKLFDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPTVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETIILLLSLKVEYPKNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPASSPETSPERHIEDTWMQELNANRPPTPTRGRPQATNDRGSLAWI 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1301 995 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 49 995 - -
Lal10g1301 995 MobiDBLite consensus disorder prediction 971 986 - -
Lal10g1301 995 SUPERFAMILY Kelch motif 135 424 IPR015915 GO:0005515
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 693 720 IPR006186 GO:0016787
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 728 755 IPR006186 GO:0016787
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 761 785 IPR006186 GO:0016787
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 799 825 IPR006186 GO:0016787
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 889 909 IPR006186 GO:0016787
Lal10g1301 995 PRINTS Serine/threonine phosphatase family signature 911 927 IPR006186 GO:0016787
Lal10g1301 995 MobiDBLite consensus disorder prediction 971 995 - -
Lal10g1301 995 MobiDBLite consensus disorder prediction 22 57 - -
Lal10g1301 995 MobiDBLite consensus disorder prediction 538 567 - -
Lal10g1301 995 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 49 995 - -
Lal10g1301 995 SMART pp2a_7 665 949 IPR006186 GO:0016787
Lal10g1301 995 Gene3D - 186 438 IPR015915 GO:0005515
Lal10g1301 995 Gene3D - 61 185 IPR015915 GO:0005515
Lal10g1301 995 SUPERFAMILY Metallo-dependent phosphatases 650 950 IPR029052 -
Lal10g1301 995 PIRSF STPPP_BSU1 34 995 IPR012391 GO:0004721|GO:0009742
Lal10g1301 995 ProSitePatterns Serine/threonine specific protein phosphatases signature. 762 767 IPR006186 GO:0016787
Lal10g1301 995 Gene3D - 608 972 IPR029052 -
Lal10g1301 995 CDD MPP_Bsu1_C 645 947 IPR041758 -
Lal10g1301 995 Pfam Calcineurin-like phosphoesterase 693 900 IPR004843 GO:0016787
Lal10g1301 995 Pfam Kelch motif 322 367 IPR011498 GO:0005515
Lal10g1301 995 MobiDBLite consensus disorder prediction 541 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1301 Lal-Chr10 19033516 19045933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1301 657 892 Calmodulin-binding Proteins AT5G63870 29.412 9.65e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1301 - - gmx:100790406 1746.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1301 10 19033516 19045933 Lal2g0386 2 2320991 2334354 PCT
Lal10g1301 10 19033516 19045933 Lal9g0352 9 2340907 2353381 PCT
Lal2g0386 2 2320991 2334354 Lal10g1301 10 19033516 19045933 PCT
Lal9g0352 9 2340907 2353381 Lal10g1301 10 19033516 19045933 PCT