Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1298 ATGAGAACAATCTCCAATAATAATGAGGTGGAAAATGATTATGAAGGTTCATTGAAGAAGGGGCCATGGACACAAGATGAAGATGCGATATTAATAGATTACGTGAACACATATGGTGAAGGGAATTGGAATTCAGTACCAAAGAATTCAGGATTGTCAAGGTGTGGTAAAAGTTGTAGACTCAGGTGGGCCAATCATCTAAGGCCAAATCTTAAGAAAGGTGCATTTTCTCCTGAAGAAGAACGAGTTATTGTTGATCTTCACGCCAAACTCGGTAACAAATGGGCTCGAATGGCCTCACAGTTACCTGGCAGGACTGACAATGAAATAAAGAATTTTTGGAATACAAGAATAAAAAGGCGTGAGAGAGCGGGTTTACCAATTTACCCTCCAGAAGTTATTCGTGATGCTACTCTCTACCATATACGAGAGGAACAATATTTTGATCAACCTTATAATTCTTCTCTCTCATCTTCATCATTTCCTCCACTATTATCTTCTTCTTATCCTAAAAAGTTGAATGCCTCAAGCCATTATCATGCTCTTGTAAACCCTAAGAAGTTGAATGCCTCAAACCATTACCGTGGTCCTTTAAACCATAAGAAGAACCAACCTATTTCTCTATATGGTTCATCATCCAATTTGTTCAACAACAATGGGTTTGTTATTTCTAATAATTATGCTCGACCAGTTTCACATGATTATCAATACTATAATAATGGTTTCAATACAAGTTCTATCATGCCTCCATTGGCGCCAAGCTCGGTCTCTTCAAGCATAACACCACCCGACTCGGTTACTCCAGCTTCATCCAATGTTAGTGGTGTTGATGGTTTCATGGGAGCTTCAAGCAAGGTATATCATTAA 867 0.3852 MRTISNNNEVENDYEGSLKKGPWTQDEDAILIDYVNTYGEGNWNSVPKNSGLSRCGKSCRLRWANHLRPNLKKGAFSPEEERVIVDLHAKLGNKWARMASQLPGRTDNEIKNFWNTRIKRRERAGLPIYPPEVIRDATLYHIREEQYFDQPYNSSLSSSSFPPLLSSSYPKKLNASSHYHALVNPKKLNASNHYRGPLNHKKNQPISLYGSSSNLFNNNGFVISNNYARPVSHDYQYYNNGFNTSSIMPPLAPSSVSSSITPPDSVTPASSNVSGVDGFMGASSKVYH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1298 288 Gene3D - 17 73 - -
Lal10g1298 288 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lal10g1298 288 MobiDBLite consensus disorder prediction 1 20 - -
Lal10g1298 288 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lal10g1298 288 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lal10g1298 288 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 270 - -
Lal10g1298 288 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lal10g1298 288 MobiDBLite consensus disorder prediction 253 273 - -
Lal10g1298 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 67 IPR017930 -
Lal10g1298 288 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lal10g1298 288 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 270 - -
Lal10g1298 288 CDD SANT 75 116 IPR001005 -
Lal10g1298 288 CDD SANT 22 67 IPR001005 -
Lal10g1298 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lal10g1298 288 Gene3D - 75 121 - -
Lal10g1298 288 SMART sant 72 120 IPR001005 -
Lal10g1298 288 SMART sant 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1298 Lal-Chr10 19008732 19010515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1298 18 149 MYB Transcription Factor Family AT2G32460 74.242 1.37e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal10g1298 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1298 K09422 - gmx:100784779 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0053 25 395093 398336 Lal10g1298 10 19008732 19010515 LSH