Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1296 ATGGAGTTGCCTTTGTTCACAAGGCATGTTATCAAGGTTATGACCAACTTGCTGTTGTTCCTCTTGGTTTTCTCAGCAACTACTATTGCAAATTCTACTCTTTCTTCTTCTTCTTCAAAACCAAGTGTTGTGAAAATTGGAGCATTATTTACTCTTAATTCTGTCATTGGAAGATCAGCTAAACCTGCAATCATGGCTGCTGTTCATGATGTTAATGCTAATACCACCATTCTCCCTGCCATTAAGTTGGAAGTTATTTTACATGATACTAATTGCAGTGGTTTTCTTGGAACAGTAGAAGCTCTGCAGCTGATGGAGAATGATGTGGTTGCTGCAATTGGTCCACAGTCTTCGGGAATAGCCCATATAATCTCTCAAGTTGCTAATGAACTTCATGTTCCTCTTATTTCATTTGGTGCAACAGACCCTTCTCTATCTTCACTTCAATTCCCTTATTTCATCAGAACCACTCAGAATGACTATTTCCAAATGCATGCAATTGCTGACTTTGTCGATTACTATAAATGGAGGGAGGTAATAGCCATCTTTGTAGATGATGATAATGGAAGGAATGGAGTTTCTGTATTGGGAGATGCTTTGGCACAAAAACGTGCAAAGATTTCTTTTAAGGCTGCTTTCACTCCTGCTGCACCCAAAAGTGATATCACTGACTTGTTAACTAGAGTTAACTTAATGGAATCACGCATCTATGTTCTTCATGTTAATCCTGATTCCGGTTTGGAAATTTTCTCTATTGCCAAGAAGCTAGGAATGATGACAAGTAGTTATGTGTGGATTGCCACGAATTGGCTTCCTTCGGTGTTGGATTCATTAGAGAACGTTGACACAATGAATCTCTTACAAGGTGTTGTTGCTTTTCGTCACCACACACCAGATACTAATCTCAAAAGGAGTTTTATCTCTAGGATGAAAAGCCTTAAAGACAAGGAGACTAAAAACTTCAATTCTTATGCACTATATGCATATGATTCTATTTGGTTAGCAGCACATGCTCTTGATGTTTTTCTCAATGAAGGTGGAAACATATCTTTCTCATCTGATCCTGTGTTGCATAACACAAATGGAAGCATGTTGCATTTATCATCGCTTCGTGTTTTCAATGGCGGCCAACAGTTTCTGCAGACAATTTTGAGAACAAACTTCACCGGTATCAGTGGTCAGATTCAGTATGATACGGATAAGAATTTAATCCATCCAGCATATGATATTCTGAATATCGGCGGATTTGGATCACGTAGAATTGGTTATTGGTCTAATTACTCTGGTCTCTCTGTTATAGCTCCAGAAATTTTGTATGAGCAACCACCTAACACTTCAACAAGTAATCAACAACTGTACAGTGTTATATGGCCTGGAGAGACTACAAACACACCAAAGGGGTGGGTATTCCCTAACAATGGAAAGCCACTAAGGATAGCAGTGCCTAACAGAGTTAGCTATTTGGACTTTGTTTCGGAGGACAAGAACCCTCCTGGTGTAGAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCGCGACAGTATATGCTATTTGGAAACGGTGATATAAATCCTGACTATAACAACCTTGTGTATCAGCAGAAATTTGATGCAGCTGTTGGAGATATTACAATAGTGACAAACAGGACAAGGTTTGTGGATTTTACTCAACCTTACATGGAATCAGGGCTGGTTGTTGTTGTTCCTGTGAAGGAGATAAAGTCAAGTGCTTGGTCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACAGCTGCCTTATTTCTTTTTGTGGGAATTGTTGTATGGATTCTTGAGCGCAGGCACAATGACGAGTTTCGTGGTACACCAAGGCAACAACTCAACACAATTTTATGGTTTACTTTCTCAACAATGTTTTTCGCACACAGAGAGAATACTGTGAGTAATCTTGGGAGAGTAGTGCTGATCATATGGCTTTTTGCAGTGCTAGTAATCACTTCAAGCTATACAGCTAGCTTAACATCCATCCTCACAGTGCAACAACTTTCATCAGAAATTGAAGGCATTGATAGCTTGATATCAGATACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCAAAGAAGTATCTCATAGATGAACTCAATATAGCACCATCTAGGATAGTTTCTTTGAAAAACCAGGATGCATATATCGATGCCCTTACGCGTGGACCCAAAAATGGAGGGGTTATGGCAATTGTTGATGAGCTTCCTTATATTGAAATCTTCATGTCCAATACAAACTGTCAATTCAGAATAGTTGGGCAGGAGTTCACAAGAAGTGGTTGGGGATTTGCATTCCAGAGGGAATCTCCTCTTGCTGTTGATATGTCAACAGCAATTCTCCAACTAGCTGATAATGGTAATTTGCAAAAGATTCATGACAAGTGGCTTTTGAGAAATGTTTGTGTTGCACAAGTCAGTAATGATCAATCATATAAACTATCTCTGAGTAGCTTCTGGGGACTCTTTCTTATTATTGCCATTGCATGTTTCCTTGCCTTGACTGTATTCTTTATTAAAGTGATGTGTCAATATAAGAAATTCAGCACTGGTCATGAAATTCAACCACACCAAATGAATTGCTTCAAGGGCTTGATCGATTTTATGGATAAGAGAGAAGAAGATGTCAAAGAGATATTTAGACAAAAAAATACTACAAAATCTGATGAGCAATCAACTTCACATATCTAA 2745 0.3883 MELPLFTRHVIKVMTNLLLFLLVFSATTIANSTLSSSSSKPSVVKIGALFTLNSVIGRSAKPAIMAAVHDVNANTTILPAIKLEVILHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHIISQVANELHVPLISFGATDPSLSSLQFPYFIRTTQNDYFQMHAIADFVDYYKWREVIAIFVDDDNGRNGVSVLGDALAQKRAKISFKAAFTPAAPKSDITDLLTRVNLMESRIYVLHVNPDSGLEIFSIAKKLGMMTSSYVWIATNWLPSVLDSLENVDTMNLLQGVVAFRHHTPDTNLKRSFISRMKSLKDKETKNFNSYALYAYDSIWLAAHALDVFLNEGGNISFSSDPVLHNTNGSMLHLSSLRVFNGGQQFLQTILRTNFTGISGQIQYDTDKNLIHPAYDILNIGGFGSRRIGYWSNYSGLSVIAPEILYEQPPNTSTSNQQLYSVIWPGETTNTPKGWVFPNNGKPLRIAVPNRVSYLDFVSEDKNPPGVEGYCIDVFEAAINLLPYPVPRQYMLFGNGDINPDYNNLVYQQKFDAAVGDITIVTNRTRFVDFTQPYMESGLVVVVPVKEIKSSAWSFLKPFTAQMWCVTAALFLFVGIVVWILERRHNDEFRGTPRQQLNTILWFTFSTMFFAHRENTVSNLGRVVLIIWLFAVLVITSSYTASLTSILTVQQLSSEIEGIDSLISDTQPIGIQEGSFAKKYLIDELNIAPSRIVSLKNQDAYIDALTRGPKNGGVMAIVDELPYIEIFMSNTNCQFRIVGQEFTRSGWGFAFQRESPLAVDMSTAILQLADNGNLQKIHDKWLLRNVCVAQVSNDQSYKLSLSSFWGLFLIIAIACFLALTVFFIKVMCQYKKFSTGHEIQPHQMNCFKGLIDFMDKREEDVKEIFRQKNTTKSDEQSTSHI 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1296 914 PIRSF IGluLR_plant 11 913 IPR017103 -
Lal10g1296 914 Gene3D - 159 430 - -
Lal10g1296 914 SUPERFAMILY Periplasmic binding protein-like I 39 469 IPR028082 -
Lal10g1296 914 Pfam Bacterial extracellular solute-binding proteins, family 3 539 815 IPR001638 -
Lal10g1296 914 CDD GluR_Plant 475 815 - -
Lal10g1296 914 Gene3D - 708 819 - -
Lal10g1296 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Lal10g1296 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Lal10g1296 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Lal10g1296 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 661 683 - -
Lal10g1296 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 901 - -
Lal10g1296 914 Gene3D - 586 707 - -
Lal10g1296 914 CDD PBP1_GABAb_receptor_plant 45 432 IPR044440 -
Lal10g1296 914 PANTHER GLUTAMATE RECEPTOR 3.4 31 901 - -
Lal10g1296 914 Gene3D - 469 585 - -
Lal10g1296 914 Pfam Receptor family ligand binding region 61 413 IPR001828 -
Lal10g1296 914 SMART GluR_14 478 817 IPR001320 GO:0015276|GO:0016020
Lal10g1296 914 Gene3D - 63 405 - -
Lal10g1296 914 Pfam Ligand-gated ion channel 816 848 IPR001320 GO:0015276|GO:0016020
Lal10g1296 914 SUPERFAMILY Periplasmic binding protein-like II 453 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1296 Lal-Chr10 18999932 19003564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1296 40 782 Ion Channels AT1G05200 68.717 0.0 1109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1296 K05387 - gmx:100799912 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0048 25 347623 352789 Lal10g1296 10 18999932 19003564 LSH
Lal10g1296 10 18999932 19003564 Lal8g0038 8 338652 344515 LSH
Lal9g0385 9 2543834 2549545 Lal10g1296 10 18999932 19003564 PCT