Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1294 ATGTGCAAAGGTGCAGAAGAGAAAAAACATGGTGGTTCATGCAGGAGCTTCCAACCTACTTTACCTGCTGCAACTACAGGTTTTAGATGTTGTGAGCTTTGTGGATTAGATGCTTCATTGTATTGCCAAGCTGATGATGCATACTTATGTCCAAAATGCGATAAAAGGGTTCATGAAGCCAATTTTTTGGCCCTTAGGCACATTAGGTGCTTTCTTTGCAACACATGTCAAAACCTTACAAGAAGATACCTCATTGGAGCCTCATTTGAGAATATTATTTCCACAATGAGAATTGTTATTATCACAAGAACAAACCATTTTCTCATTGATGTAGGTGCCCAAGAAACAGTTATTGAAATCAAAAGGAAAATAGAACAAATCCATGGTGCTCCAATGGATTCACAGATCCTAAGTGTTTCAGGGTGGGAACTAATAGATGGATTGGACATGGAAGATTACCCCATAGTCACTGAAGGTACAAAAGTTGACCTCACCATCAAACCAGTGGAACCAACACATCCTAATGATAATAATAATAATAATTATAATCATCCTAACAAAATGCAAATCACAATAAAATTTTCAGCTAGACAAATTAACATAGAGGTGGACCAAACCGATACTATTCGCAGCTTGAAGGAAAAGATTCACATAATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTCTCAGGAAAAGAATTGGATGAAGACTTTAGGAACTTGAATGAGTGTGGGATACATGAATATTCTGAAATTGTAGTGTTCCTGAAGGGTGTGAACCGGTCAAGAGATGAACCTGCAGCAAGAAAGTTAAGCATAGTGGTACAAACTTCATCTAGTTTGCTTAATGGAGCTACTATTCCATTGGAGATGAGAGATATAAACACTGTGAATGACTTAAAGCAGTTGTTGTTGAGCAGAAAAACTCTGCCACTTGATGACTACTTGTTCATACACAGGCAGAGGATCATGCATGATAGCTGCAGCCTCAGGTGGCATGGTGTTGAAAATGGAGACTGTCTCTATGTCTTTAAAGGAACTGTTAGTCGTGCTTGA 1062 0.3842 MCKGAEEKKHGGSCRSFQPTLPAATTGFRCCELCGLDASLYCQADDAYLCPKCDKRVHEANFLALRHIRCFLCNTCQNLTRRYLIGASFENIISTMRIVIITRTNHFLIDVGAQETVIEIKRKIEQIHGAPMDSQILSVSGWELIDGLDMEDYPIVTEGTKVDLTIKPVEPTHPNDNNNNNYNHPNKMQITIKFSARQINIEVDQTDTIRSLKEKIHIIDSTPIKRMTLYFSGKELDEDFRNLNECGIHEYSEIVVFLKGVNRSRDEPAARKLSIVVQTSSSLLNGATIPLEMRDINTVNDLKQLLLSRKTLPLDDYLFIHRQRIMHDSCSLRWHGVENGDCLYVFKGTVSRA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1294 353 Pfam Ubiquitin family 103 167 IPR000626 GO:0005515
Lal10g1294 353 Pfam Ubiquitin family 190 259 IPR000626 GO:0005515
Lal10g1294 353 ProSiteProfiles Ubiquitin domain profile. 188 259 IPR000626 GO:0005515
Lal10g1294 353 ProSiteProfiles Ubiquitin domain profile. 273 345 IPR000626 GO:0005515
Lal10g1294 353 CDD Ubl_ubiquitin_like 98 164 - -
Lal10g1294 353 SMART ubq_7 188 259 IPR000626 GO:0005515
Lal10g1294 353 SMART ubq_7 96 167 IPR000626 GO:0005515
Lal10g1294 353 SMART ubq_7 271 348 IPR000626 GO:0005515
Lal10g1294 353 CDD Ubl_ubiquitin_like 190 257 - -
Lal10g1294 353 PANTHER UV EXCISION REPAIR PROTEIN RAD23 96 352 - -
Lal10g1294 353 SMART bboxneu5 26 72 IPR000315 GO:0008270
Lal10g1294 353 Gene3D - 187 259 - -
Lal10g1294 353 Gene3D - 260 351 - -
Lal10g1294 353 SUPERFAMILY Ubiquitin-like 182 267 IPR029071 -
Lal10g1294 353 CDD Ubl_ubiquitin_like 283 346 - -
Lal10g1294 353 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 96 352 - -
Lal10g1294 353 Gene3D - 96 164 - -
Lal10g1294 353 CDD Bbox1_BBX-like 30 72 - -
Lal10g1294 353 ProSiteProfiles Ubiquitin domain profile. 96 155 IPR000626 GO:0005515
Lal10g1294 353 SUPERFAMILY Ubiquitin-like 273 348 IPR029071 -
Lal10g1294 353 SUPERFAMILY Ubiquitin-like 92 170 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1294 Lal-Chr10 18994071 18996397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1294 1 86 C2C2-CO-like Transcription Factor Family AT3G21890 50.000 6.67e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1294 - - lang:109342690 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1294 10 18994071 18996397 Lal8g0048 8 403263 403789 LSH