Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1283 ATGGGGAGGAAGTGTTCAATTTGTGGGAACATGGGTCATAATTCAAGGACCTGCACATCACTTAGAGGAACATTTGTAGGGTTTCGCCTCTTTGGTGTTCAACTAGACATATCTTCTTCATCTTGTGTTACTACCATGAAGAAAAGCTTTAGCATGGATTCCTTCTTGCCCTCATCATCATCTTCCTCCTTTGCGTCATCAAGAATAACAATTGATGAAAACTCTCCTGATAGAACTTCTATTGGTTATCTATCAGATGGTCTCATAGTTCGAGCTCAAGAGAGGAAAAAAGGAGTAGTATGGACAGAAGAGGAGCATAGAAGATTCGTTGTTGGAGTTGAGAAGCTAGGAAAAGGTGATTGGAGGGGTATATCAAGAAACTATGTCACTACAAGAACCCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTTCGACTTGCAGCCATTAATAGGAAGAGGCCACGTTCAACTCTCTTTCACTTGGTGAATAGCGGCAACACAAACACAAGAGCTCCTATTAGCTTCACCAATAATGGCAAGTCAGGTGACTCAGTCACTACTAATCAACATATTCAATCCAAATTTGAAGTTGAGAATGATGCCACTTTGTCTCTGCTAGGAACCCTCACATCTTTTCAACAACAAACTGAATCAGATAACCAAAAAACTAGTTATAATTACTCCCAATTTCATGCAGAAGAACATGAACCCGTGCATATGAGGTTTATGAAATCTTCAAATGTAACTTTGGCAATAGGAACACATGATCTGGAGCTCACACTTGCAGCCCCAAAGGCTAAGACATTGGACTCATCCTCGGTTTCTTTCCTTCCTGGGCCAATTACTGTGACTTAA 861 0.4077 MGRKCSICGNMGHNSRTCTSLRGTFVGFRLFGVQLDISSSSCVTTMKKSFSMDSFLPSSSSSSFASSRITIDENSPDRTSIGYLSDGLIVRAQERKKGVVWTEEEHRRFVVGVEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLAAINRKRPRSTLFHLVNSGNTNTRAPISFTNNGKSGDSVTTNQHIQSKFEVENDATLSLLGTLTSFQQQTESDNQKTSYNYSQFHAEEHEPVHMRFMKSSNVTLAIGTHDLELTLAAPKAKTLDSSSVSFLPGPITVT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1283 286 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 274 - -
Lal10g1283 286 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Lal10g1283 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Lal10g1283 286 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Lal10g1283 286 SMART sant 97 147 IPR001005 -
Lal10g1283 286 PANTHER TRANSCRIPTION FACTOR KUA1 1 274 - -
Lal10g1283 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Lal10g1283 286 ProSiteProfiles SANT domain profile. 100 149 IPR017884 -
Lal10g1283 286 CDD SANT 101 145 IPR001005 -
Lal10g1283 286 Gene3D - 100 151 - -
Lal10g1283 286 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1283 Lal-Chr10 18938103 18939476 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal10g1283 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1283 - - adu:107490116 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1061 16 7097197 7102705 Lal10g1283 10 18938103 18939476 PCT
Lal10g1283 10 18938103 18939476 Lal16g1061 16 7097197 7102705 PCT