Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1270 ATGATGCTGGGGGAACACCATCGATCAAATCCAACCATACACGTACCTCCATGGCAGGATCCGACGGAGGATATGTACTCTTCTTGCTTCAAAACAGACGTTACTGACGGCAATGCTGCTGCCGCTGATTACTCTCCATATTACATGCAGGAAATGTTGACGGCACTGCATCGTTACCTGCCTTCTAACGACCCTGATTCTCACTCGGACTCTGATGTTCCGGGCCGTGAATCAGACGCGCCGGTTGACGCATACTCCTGTGACCAGTTCCGTATCTACGAGTTCAAGATACGTAAGTGTGCACGTGGCAGGTCACATGACTGGACCGAATGTCCGTACGCTCATCCCGGAGAGAAGGCACGCCGGAGGGATCCTCGGAAGTTCCACTACTCCGGCACGGCGTGCCCTGATTTTCGTAAAGGTAATTGCAAGAAAGGTGACGCGTGTGAGCACGCGCATGGAGTTTTCGAGTGCTGGCTTCACCCCGCGCGTTACCGCACGCAGCCATGCAAGGACGGTACCAGTTGCAGGAGAAGGGTTTGCTTCTTCGCTCACACGCCGGAGCAGCTTCGAATCGTGCCTAATCACAGCCCTAGAAGCATTGATTCATACGACGGTTCTCCTATGAGAAACGGAACGATGGCGTTTATGTCATCTCCGATTTCTCTCTCGCCGCCGATGAGTCCTACAGCGGAATCGCCGCCCATGTCTCCGATGACAAGAAGCTCAATGAATGACATGGTGGCTTCCCTGCGTAACTTACAACTTGGGAAGGTGAAATCTATGCCTAGTAATAGGAACGTTATTCCAATGGGCTCACCCGGGTTCGGGTCACCGAGAGTTTCGTTGCTACGAGCCGGGTTTCTTAGCCTCCCTTCTACACCAACCCAGGTTCCGGGTGGGCGTGGTGTTAGCCACTTCGATCAATGGGATCAGAGTGGTAAGGAGGAACCGGTTATGGAGAGGGTTGAGTCTGGGAGGGGTATAAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAGAACTCTCTTGACGGGTCGGGCCAAGTTTCGGATGGAGCCCCAGATGTTGAGTGGGTTTCTGAGCTGTTGGAGTGA 1095 0.5306 MMLGEHHRSNPTIHVPPWQDPTEDMYSSCFKTDVTDGNAAAADYSPYYMQEMLTALHRYLPSNDPDSHSDSDVPGRESDAPVDAYSCDQFRIYEFKIRKCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRIVPNHSPRSIDSYDGSPMRNGTMAFMSSPISLSPPMSPTAESPPMSPMTRSSMNDMVASLRNLQLGKVKSMPSNRNVIPMGSPGFGSPRVSLLRAGFLSLPSTPTQVPGGRGVSHFDQWDQSGKEEPVMERVESGRGIRAKMFEKLSKENSLDGSGQVSDGAPDVEWVSELLE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1270 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 363 - -
Lal10g1270 364 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Lal10g1270 364 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Lal10g1270 364 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Lal10g1270 364 PANTHER UNKEMPT FAMILY MEMBER 7 363 IPR045234 -
Lal10g1270 364 MobiDBLite consensus disorder prediction 63 77 - -
Lal10g1270 364 MobiDBLite consensus disorder prediction 59 80 - -
Lal10g1270 364 MobiDBLite consensus disorder prediction 294 315 - -
Lal10g1270 364 Gene3D - 129 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1270 Lal-Chr10 18880635 18881729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1270 85 268 C2H2 Transcription Factor Family AT5G12850 50.754 2.07e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal10g1270 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1270 - - aprc:113867365 562.377