Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1247 ATGGGTTGCTTTGGTTGCGCGAAAAGATCACGCAAAAAATCCGTCACAAACAATCCCACTTCTATTGATAAGGTCAGATTTGATTTGAATGTGAATGGTAGAAGGGAAGATAAAAAAGCTAAGGATGATCAACTTTCTGTGGACGTGAGGAATTTGAATATAAGAGAGGGTGTTTCCAAGGAGGTTAAACCCAATGGTTACCAGGCACAGTCATTTACCTTTGTTGAGCTTGCAGCTGCAACAGGAAATTTTAGACCAGATTGCTTTCTGGGTGAAGGAGGGTTTGGCAAAGTTTATAAGGGACACTTGGAGAAAATAAACCAGGTTGTAGCCATAAAGCAACTTGACCCACATGGGAGTCAAGGAACTCACGAATTTGCTGTTGAAGTGTTAACATTGAGTTTGGTAGACCATCCTAATCTAGTCAAGTTGATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTGTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCATGATCTTAAACCCGGAAGAAAACCACTTGATTGGAATACTAGAATGAACATTGCAGCTGGTGCAGCTAGGGGTTTGGAGTATTTGCATGATAAAATGAAGCCTCCTATCATATACCGTGACCTGAAATGCTCAAACATTTTGTTAGGAGAGGGATATCATGCCAAGTTATCTGACTTTGGCTTGGCCAAAATAGGTCCAAGTGGTGATAAGACTCATGTTTCAACCAGGGTTATGGGTACATATGGGTATTGTGCCCCAGAGTATGCGATGACAGGTCAGTTAACATTCAAGTCTGATATTTACAGCTTTGGAGTTGTTCTTTTGGAACTCATCACTGGCAAGAAAGCTATCAGCCAAACAAAATCTGGCAAAGAACAAAATCTAGTTGCATGGGCAAGGCCCTTGTTCCGAGACCGGAAAAAGTTCACACAGATGATTGATCCATTGCTTGAAGGTAATTTTCCAGTGAGAGGGTTGTACCAAGCTCTTGCTATTGCTGCTATGTGTGTCCAAGAGCAGCCTAATATGCGTCCCGCAATAGCCGATGTGGTTACAGCTCTAAACTACCTTGCATCTCAGAAATACGATCCTCATAATCGTTCAATGCAATGCAGCCAATTCCACGAAAACAGCTTGTCTTCTCCAAGAATGAGAAGGAATGGTCATAGACATGTTGATATTTGA 1197 0.4211 MGCFGCAKRSRKKSVTNNPTSIDKVRFDLNVNGRREDKKAKDDQLSVDVRNLNIREGVSKEVKPNGYQAQSFTFVELAAATGNFRPDCFLGEGGFGKVYKGHLEKINQVVAIKQLDPHGSQGTHEFAVEVLTLSLVDHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLHDLKPGRKPLDWNTRMNIAAGAARGLEYLHDKMKPPIIYRDLKCSNILLGEGYHAKLSDFGLAKIGPSGDKTHVSTRVMGTYGYCAPEYAMTGQLTFKSDIYSFGVVLLELITGKKAISQTKSGKEQNLVAWARPLFRDRKKFTQMIDPLLEGNFPVRGLYQALAIAAMCVQEQPNMRPAIADVVTALNYLASQKYDPHNRSMQCSQFHENSLSSPRMRRNGHRHVDI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1247 398 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1247 398 MobiDBLite consensus disorder prediction 379 398 - -
Lal10g1247 398 CDD STKc_IRAK 90 359 - -
Lal10g1247 398 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1247 398 Pfam Protein kinase domain 90 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1247 398 PANTHER OS07G0668900 PROTEIN 1 381 - -
Lal10g1247 398 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Lal10g1247 398 SUPERFAMILY Protein kinase-like (PK-like) 70 380 IPR011009 -
Lal10g1247 398 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 381 - -
Lal10g1247 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lal10g1247 398 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
Lal10g1247 398 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1247 Lal-Chr10 18730549 18739542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1247 1 363 Glycoside Hydrolase AT3G07070 58.678 2.25e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal10g1247 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1247 - - gmx:100794680 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1247 10 18730549 18739542 Lal10g1247 10 18730549 18739542 ECH
Lal13g1140 13 8722915 8726007 Lal10g1247 10 18730549 18739542 ECH
Lal25g0162 25 1035733 1039466 Lal10g1247 10 18730549 18739542 LSH
Lal10g1247 10 18730549 18739542 Lal9g0247 9 1533217 1536834 PCT
Lal9g0247 9 1533217 1536834 Lal10g1247 10 18730549 18739542 PCT