Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1242 ATGAATTGTAGGGACACAAACACTCCTACTTCATCTCTATCATTTTCTTATTCTTCTTGTCCCACTTATTCCATATCTCCCCCTCCAAAACCTATAACTCCTCAAGTAGTGATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGGCGAAAATGTGCTGAAAAATGTGTGTTGGCACCTTATTTCCCTCCCCATGACCCTGCAAAGTTCACCATTGTGCATCGTGTCTTTGGAGCCAGCAATATCATCAAGTTCTTACAGGAACTTCCAGAGTCTGAAAGAGGTGATGCAGTGACTAGCATGGTTTATGAGGGCAGTGCAAGAATAAGAGATCCAGTATATGGTTGTGCAGGTTCAATTTGCAACCTTCAAAATCAAGTCAACGAACTTCAAGCACAATTAGCAAAGGCACAAGCTGAGATTGTTAACATGCAATTACAACAAACCAATCTCGTGCCTCTAATTTGCATGGAAATGACACCACAACAATCATCACCCCAACATTTTGTTGAGAATTTCATTCCAAGTCCTGTTGGCAAAAACGGATTCCAAACAAGTCCTCACCACAGTAACATTGGCTATCAAAACAATCTCAACTTTTATGAGGAAAACATTAGCCTAAACTCATTGTTGGAGCCTCTTTGGACATGA 648 0.409 MNCRDTNTPTSSLSFSYSSCPTYSISPPPKPITPQVVMSPCAACKILRRKCAEKCVLAPYFPPHDPAKFTIVHRVFGASNIIKFLQELPESERGDAVTSMVYEGSARIRDPVYGCAGSICNLQNQVNELQAQLAKAQAEIVNMQLQQTNLVPLICMEMTPQQSSPQHFVENFIPSPVGKNGFQTSPHHSNIGYQNNLNFYEENISLNSLLEPLWT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1242 215 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
Lal10g1242 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 178 - -
Lal10g1242 215 Coils Coil 119 146 - -
Lal10g1242 215 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Lal10g1242 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 24 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1242 Lal-Chr10 18701158 18702940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1242 35 215 AS2 family AT1G07900 60.541 2.14e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal10g1242 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1242 - - gmx:100789504 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1242 10 18701158 18702940 Lal10g1242 10 18701158 18702940 ECH
Lal25g0169 25 1085787 1086949 Lal10g1242 10 18701158 18702940 LSH
Lal10g1242 10 18701158 18702940 Lal8g0133 8 924099 925621 LSH
Lal10g1242 10 18701158 18702940 Lal1g0365 1 2212661 2216475 PCT
Lal10g1242 10 18701158 18702940 Lal2g0270 2 1572536 1573600 PCT
Lal1g0365 1 2212661 2216475 Lal10g1242 10 18701158 18702940 PCT
Lal2g0270 2 1572536 1573600 Lal10g1242 10 18701158 18702940 PCT