Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1239 ATGGATTTGGTATCCAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGACAGGATATTATCGATTCTTGCTGATGAACAGGTTTCAAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAAGTGGCAAAATTAGTGGATGACACATATAGAAAATTGCAGGGGTCCGGAGCCATTGATAGCAGTAATGTGAATGTGAATGTGAATGTTAAAGCTGAAATCGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGCCATTGATCAAGTGTGAAGATACAAGATGCCATGTGTGGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGAAGGAGCTCCTCTAGTTCCTGAGAAATTTTATTGTGAAACCTGCCGACTCAGTCGTGCAGATCCGTTTTGGGTTTCAGTGGCACATCCGTTGGTTCCTGTGAGGTTGACTACAACCAGTATTCCAACTGATGGAACCAACCCAGTTCAGAGCGTGGAGAAAACATTTCAACTTACGAGAGCTGACAAGGACTTGATATCAAGGCCAGAATTTGATGTCCAAGTTGGCTTGGTGTATGCTTCTGAACGACAAAGTTTCATTCAGGATGCAATGGCCACAATATACAGACCTACAGGTCAACGGTATGATAAATCAAGCCATGATCCTCACTGGAGTATTTTGGTTTTTTGTTTTTCTGTACGTGCAATAAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGCGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACTGGGTGTGATGCTCGCATTTTCTGTTTAGGGGTCCGTATTGTTAGAAGGCGAAGCATGCTGCAGATCTTAAACACGATTCCAAAGGAGTCCGAAGGTGAGCGTTTTGAAGATGCTCTTGCACGCGTCATTTCTTGTGTTGGGGGTGGAAATGGAAGTGATAATGCTGATAGTGACAGTGACTTGGAAGTGGTTTCAGATACCTTCAGCATCAACCTTCGTTGTCCAATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAATTTTTGTGGAAATGAATCAACGTTCAAGAAAGTGGCAATGCCCCATATGTCTTAAGAATTATGCATTGGAGAATATCGTTATTGACCCTTATTTCAATCGCATCACTAAAATGATGACAAATTGTGGAGAAGAAGTTACTGAGGTTGAGGTAAAGCCCGATGGCTCTTGGCGTGTCAAGGTTAAGGGTGAAAGTGGACGCCGGGAGTTGGGGAATCTTGCTCAATGGCACTGTCCTGATGGATCCCTCTCTGTTTCTACTGATGCAGAAGTTAAGAGTGTGGAAACTTCGAAGCTCAAACAGGATGGGGTTTTAGATAGTCCTGCTGCTTTAAGACTTGGCATCAGGAAGAATAGCATTGGAGTTTGGGAAGTCAATAAACCTGAGGGCACAAACACCTCTTCTAGTAATAGGTTGAATGAGGATTTTGGAAATCATGAACATGTGGTTATTCCAATGAGTAGCAGTTCCACTGGAAGTGGCTGGGATCGTGATGATCCTAGCGTAAATCAAGGTGGTGCGGGGCTTGTTGATTATTCAAGTGCCAATGGGATTGAGATGGAGTCTCTGTATCACAATAATGTGGATTCAGCTCATGGATATACTGCACATAAGAGTCCAGCTCCGGTGGGTGCTGCAGAAGTTATTGTTCTGAGTGACTCAGATGAAGACAACGATATACTGGCCTCTCCTACACTTGGGTACGGAAATAATCAAACTGGTGCTGCAGGAGATGTTTACTCAGTGCCGTCGCATGAAGTTATTGATTCATATGCAGAAGATCATCAGCTTGGTGGAAATCCGTGCTCAGGACTTTTTAATAATCCCAATGAAGATGATTTTGGGTTGTCATCCCCCCTCTGGTCATTACCTTCTGGAACTCAGGCAAGCTCAGGATTTCAGTTATTTAGCTCTGATGTGGATGTATCAGATGCATTGGTCCATTTGCAGCATGGTGATATTAATTGCTCCTCATCACTTAATGGTTATACATTGGCTCCAGATACTGCTTTGGGATCTAGTACTCTCATACCAGATTCCTCTGCAGGGCGTTCTGATGCTGAATTAAATGGTGGTTTGGTTGACAATCCGTTGGCATTTGCTGGAGAAGATCCCTCACTTCAGATTTTTCTTCCAACAAGACCAGCAGACTCGTCTTTGCAGGATGAATTGAGAGATCAGGAAGATGTGTCAAATGGTATCTGCACTGAGGATTGGATTTCTCTTAGCCTTGGAGGTAGTGCCAATGGCAGTAATGGTGATGCATCAACTACAAATGGGTTGAATTCCAGACCACAAGTTACATCCAAAGAAGGTCCCACTAATACTTCGACCAATACTGCTTCTTTGCTTCTTGGTATGAATGATGTTAGATCTGACAAAGCAAGCAGACAAAGATCCGGTAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAAGTTATGAAATTTGTCCTGCCAAAATACTTGCACCTGTAGGGTTTTATTTCCCTATTGGTAAAGATGTTGGCTATAAAGATTCTGAATTCATTATACTTGATATTCAAGTTGTCCTGACAAATATGATGACAGGTCAGGAGGAAGGTATCATTAGTCCCTCCCAGTTTTCATTGAAGATCTGCTGGTGTTGGTATAGTGTTGCTATTTGTCCAGATGGTCCTTCAAATCTATTAGTACAAACTTTTTGA 2883 0.4218 MDLVSSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILADEQVSKMWAKKNAVGKEQVAKLVDDTYRKLQGSGAIDSSNVNVNVNVKAEIDDSFQSDTKIRCLCGSSLETEPLIKCEDTRCHVWQHINCVIIPEKPMEGAPLVPEKFYCETCRLSRADPFWVSVAHPLVPVRLTTTSIPTDGTNPVQSVEKTFQLTRADKDLISRPEFDVQVGLVYASERQSFIQDAMATIYRPTGQRYDKSSHDPHWSILVFCFSVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRSMLQILNTIPKESEGERFEDALARVISCVGGGNGSDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEIFVEMNQRSRKWQCPICLKNYALENIVIDPYFNRITKMMTNCGEEVTEVEVKPDGSWRVKVKGESGRRELGNLAQWHCPDGSLSVSTDAEVKSVETSKLKQDGVLDSPAALRLGIRKNSIGVWEVNKPEGTNTSSSNRLNEDFGNHEHVVIPMSSSSTGSGWDRDDPSVNQGGAGLVDYSSANGIEMESLYHNNVDSAHGYTAHKSPAPVGAAEVIVLSDSDEDNDILASPTLGYGNNQTGAAGDVYSVPSHEVIDSYAEDHQLGGNPCSGLFNNPNEDDFGLSSPLWSLPSGTQASSGFQLFSSDVDVSDALVHLQHGDINCSSSLNGYTLAPDTALGSSTLIPDSSAGRSDAELNGGLVDNPLAFAGEDPSLQIFLPTRPADSSLQDELRDQEDVSNGICTEDWISLSLGGSANGSNGDASTTNGLNSRPQVTSKEGPTNTSTNTASLLLGMNDVRSDKASRQRSGSPFSFPRQKRSSYEICPAKILAPVGFYFPIGKDVGYKDSEFIILDIQVVLTNMMTGQEEGIISPSQFSLKICWCWYSVAICPDGPSNLLVQTF 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1239 960 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 824 - -
Lal10g1239 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 165 IPR013083 -
Lal10g1239 960 MobiDBLite consensus disorder prediction 816 849 - -
Lal10g1239 960 Pfam SAP domain 14 42 IPR003034 -
Lal10g1239 960 SUPERFAMILY SAP domain 1 64 IPR036361 -
Lal10g1239 960 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 824 - -
Lal10g1239 960 Pfam MIZ/SP-RING zinc finger 370 418 IPR004181 GO:0008270
Lal10g1239 960 SMART sap_9 11 45 IPR003034 -
Lal10g1239 960 CDD PHD_Bye1p_SIZ1_like 108 159 - -
Lal10g1239 960 ProSitePatterns Zinc finger PHD-type signature. 109 159 IPR019786 -
Lal10g1239 960 SUPERFAMILY FYVE/PHD zinc finger 101 163 IPR011011 -
Lal10g1239 960 CDD SP-RING_Siz_plant 371 419 - -
Lal10g1239 960 Gene3D SAP domain 1 62 IPR036361 -
Lal10g1239 960 ProSiteProfiles Zinc finger SP-RING-type profile. 357 440 IPR004181 GO:0008270
Lal10g1239 960 SMART PHD_3 108 160 IPR001965 -
Lal10g1239 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 458 IPR013083 -
Lal10g1239 960 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1239 Lal-Chr10 18686169 18696195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1239 - - gmx:100793735 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1239 10 18686169 18696195 Lal10g1239 10 18686169 18696195 ECH
Lal25g0171 25 1092482 1108581 Lal10g1239 10 18686169 18696195 LSH
Lal10g1239 10 18686169 18696195 Lal2g0276 2 1613442 1621469 PCT
Lal10g1239 10 18686169 18696195 Lal9g0262 9 1627218 1637963 PCT
Lal2g0276 2 1613442 1621469 Lal10g1239 10 18686169 18696195 PCT
Lal9g0262 9 1627218 1637963 Lal10g1239 10 18686169 18696195 PCT