Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1237 ATGATACTTGATGAACCCTTTTCTCTTCCTTCCAACATGAGAAACAACTTCAATATTCAACAAGTTCATGACCCAATCTCAAACCCTAACTCTAACCCTAATTCAATTCCTTCCAAGAAAAAGAGGAATCCAGATGCAGAAGTGATTGCTCTTTCACCAAAGGCACTAATGGCAACCAACCGATTTATGTGTGAAATATGCAAAAAGGGTTTTCAGAGAGACCAAAACCTTCAGCTGCATCTGCGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAAATAAACAAGAGTTGATAAAAAAGAAAGTGTACGTGTGCCCAGAGAAAAGTTGCGTGCACCATTACCCTTGTAGAGCCTTGGGAGACCTCACAGGGATAAAGAAACACTATAGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCAACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACAAAAGAGTACAAATGTGAATGTGGCACTATTTTCTCCAGGAGGGATGGTTTCATAACTCATAGAGCCTTTTGTGGATCATTGGCTGAACAAAGTGCTAGAGTACTCATAACTTCAGTTCCATCAGTGTTTAACTTCAGAAACGACCAAGCACCGAGAATTCCTCATAGTTTACCTGCGTTTCAGCAAGAATTTGGTGGGCCAGGATCAGAACCATTAATAGGAAATTTTGTAGATTCAGAACATGCATTGAAGCTGAGACTGCCATTATGGTTAGACCAGACTAATTCTAATGTATACTCATCAGAAGCAAATGAAGTAGTTCAAACAATGAACATGTCTGGCTCATCACAACAGGCACAGTGGCTGAATTACAGGTACCCAGAAGCATCATTTACCAGTGCCAATTTATGTTTTCCTGTTTCTATGTCACAAGGACTGAAGCAAGAAGAACATGGAGAAAACAAAGGAAACTTGTCTCATCATAACTTGAGTTCTTTGTACTCTAGTGATCAGAACTTACAAGGTGGGCCAACTCACATGTCTACAAGGATCAATAACAATGCAACCTTCAACAGCTCTAACAATGTCTTTGGCTTGAATAACAATATTGTTGAAATGCAGAAAGTTTTGAAGCAAGGAAATGAAGAAGGAGAAAACTTCAACAATATTATGGTAAATAGTTCATTAAATGATGCAAATTGTAGTTTGTTTGGGAATTTGGATCATATGGTAATGCGGACGGTTGATGAAGAACAACTAGGATTAACCAGAGACTTTCTGGGTGTTGGAGATGAAACATTAAGAACACCAGACCTTGACAACTTCAATCCAATTGATTCAGTGGTTAACTCGCATACCCAGTTCGGTGGCCACCACAGTATGAAGTAG 1377 0.3987 MILDEPFSLPSNMRNNFNIQQVHDPISNPNSNPNSIPSKKKRNPDAEVIALSPKALMATNRFMCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQELIKKKVYVCPEKSCVHHYPCRALGDLTGIKKHYSRKHGEKKWKCNKCSKKYAVQSDWKAHSKICGTKEYKCECGTIFSRRDGFITHRAFCGSLAEQSARVLITSVPSVFNFRNDQAPRIPHSLPAFQQEFGGPGSEPLIGNFVDSEHALKLRLPLWLDQTNSNVYSSEANEVVQTMNMSGSSQQAQWLNYRYPEASFTSANLCFPVSMSQGLKQEEHGENKGNLSHHNLSSLYSSDQNLQGGPTHMSTRINNNATFNSSNNVFGLNNNIVEMQKVLKQGNEEGENFNNIMVNSSLNDANCSLFGNLDHMVMRTVDEEQLGLTRDFLGVGDETLRTPDLDNFNPIDSVVNSHTQFGGHHSMK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1237 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 13 433 - -
Lal10g1237 458 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Lal10g1237 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lal10g1237 458 SMART c2h2final6 62 84 IPR013087 -
Lal10g1237 458 SMART c2h2final6 104 134 IPR013087 -
Lal10g1237 458 SMART c2h2final6 139 159 IPR013087 -
Lal10g1237 458 MobiDBLite consensus disorder prediction 21 39 - -
Lal10g1237 458 MobiDBLite consensus disorder prediction 21 44 - -
Lal10g1237 458 Gene3D Classic Zinc Finger 40 112 - -
Lal10g1237 458 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lal10g1237 458 MobiDBLite consensus disorder prediction 310 350 - -
Lal10g1237 458 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Lal10g1237 458 Gene3D Classic Zinc Finger 116 195 - -
Lal10g1237 458 MobiDBLite consensus disorder prediction 321 350 - -
Lal10g1237 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1237 Lal-Chr10 18674067 18676146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1237 38 207 IDZ Gene Family AT3G45260 74.576 2.53e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1237 zf-C2H2_jaz 6.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1237 K25870 - gmx:100815213 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1237 10 18674067 18676146 Lal10g1237 10 18674067 18676146 ECH
Lal10g1237 10 18674067 18676146 Lal8g0137 8 941929 944189 LSH
Lal10g1237 10 18674067 18676146 Lal1g0374 1 2265403 2267176 PCT
Lal10g1237 10 18674067 18676146 Lal9g0264 9 1641314 1643146 PCT
Lal1g0374 1 2265403 2267176 Lal10g1237 10 18674067 18676146 PCT
Lal9g0264 9 1641314 1643146 Lal10g1237 10 18674067 18676146 PCT