Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1236 ATGATCAACAAGAGTTTTTCATTTTCCAAAATGGTGGGCTGCCTTAGTTGCTTGGGAGAAACTGAAGACGATGAGAACTCATTTAATGGTGAGGTCACTAGTAACACCACCAGTGGAGATGATAGTGACGTGCAAGTTCGACCTAAACGTTCGGAGGAAATTTTGAACTTCAGAGCAGAAAATGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTCGCAAACTTGTTCGCTCAGAGGATGAGAATGGGAACAGGATGATAAATGAGTATGTTCGTGAGCATAAGATTGGTTCTGGTAGCTATGGTAAAGTGACTCTTTATCGAAGTTGCTTAGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTAATGAAGATTCGAGTTGGACCTTCTGAGACTGCCATGACTGATGTCCTACGTGAGGTATTTATTATGAAAATGCTGGGACACCCTAATATAGTCAATCTCGTTGAGGTGATTGATGACCTAGAGTCGGATGACTTCTACATGGTACTTGAATATATGGAAGGCAAATGGATTTGTGAGGGTTCAGGTCGTTCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAATCTCTGGATTAGCATATCTTCATGCTCATAATATAGTGCATGGAGATATTAAACCTGATAATCTGTTGGTTAATCGGCATGGCACAGTAAAGATAGGGGATTTCAGCGTCAGCCAGGCTTTTGAGGATGATAATGATGTTCTTCGAAGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTAGTTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCATTTCTCGGAGATACACTTCAAGACACATATGATAGAATAGCCAATAATCCTTTAGTACTCCCAGATGACATTAACTCGCAGTTAAAGAACTTAATAGAAGGACTACTTTGCAAAGACCCAAGACTGAGGATGACATTGGGTGATATTGCTGAGCATAGATGGATCATTGGAGATGATGGCCCAATTTCTCAATACTTGTGTTGGTGCAAACGCAAGAGTTATTGA 1116 0.405 MINKSFSFSKMVGCLSCLGETEDDENSFNGEVTSNTTSGDDSDVQVRPKRSEEILNFRAENGMICRQFPVKETRKLVRSEDENGNRMINEYVREHKIGSGSYGKVTLYRSCLDGKHYAIKAFHKSHLMKIRVGPSETAMTDVLREVFIMKMLGHPNIVNLVEVIDDLESDDFYMVLEYMEGKWICEGSGRSCALGEETARKYLRDIISGLAYLHAHNIVHGDIKPDNLLVNRHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECCLGLSYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIANNPLVLPDDINSQLKNLIEGLLCKDPRLRMTLGDIAEHRWIIGDDGPISQYLCWCKRKSY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1236 371 SUPERFAMILY Protein kinase-like (PK-like) 87 360 IPR011009 -
Lal10g1236 371 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Lal10g1236 371 ProSiteProfiles Protein kinase domain profile. 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1236 371 CDD STKc_LKB1_CaMKK 97 352 - -
Lal10g1236 371 SMART serkin_6 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1236 371 MobiDBLite consensus disorder prediction 24 47 - -
Lal10g1236 371 Gene3D Phosphorylase Kinase; domain 1 85 188 - -
Lal10g1236 371 Gene3D Transferase(Phosphotransferase) domain 1 189 361 - -
Lal10g1236 371 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 22 370 - -
Lal10g1236 371 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 370 - -
Lal10g1236 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lal10g1236 371 Pfam Protein kinase domain 91 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1236 371 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1236 Lal-Chr10 18663927 18670897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1236 86 359 CBL-interacting serine-threonine protein kinases AT5G35410 31.752 6.37e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lal10g1236 Pkinase 2.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1236 K00908 - gmx:100776013 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1236 10 18663927 18670897 Lal10g1236 10 18663927 18670897 ECH