Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1230 ATGCCAATGAAGGAATCTCAAAAGAGCTTGGATCCTCAACTATGGCATGCCTGTGCTGGTGGCATGGTTCAGATGCCACCACTTAACTCAAAAGTGTTCTACTTTCCTCAAGGGCATGCTGAGCATGCACACACCGACCTGGATTTTGGGGATTCAATGAGTATTCCACCACTCATTCTTTGCAGTGTTGCAGCAGTGAAATTCTTTGCGGACCCTGAAACAGATGAAGTTTTTGCAAGGGTTAGGTTGGTTCCTTTGAGAAACTCAGAGGTTGATTATGATGCTAATGATGATTGTGATAATGCCTCTGAGAATTCAGAAAAGTCTGCTTCTTTTGCCAAGACATTGACTCAATCTGATGCCAACAATGGTGGAGGATTTTCAGTTCCTAGATACTGTGCAGAAACCATGTTTCCAAAGCTGGATTACTCCGCCGAGCCGCCAGTTCAGACCGTGATTGCTAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGGCATATCTATAGAGGCACGCCACGGCGCCACTTGCTCACAACTGGTTGGAGCAGTTTTGTGAATCAGAAAAAACTTGTTGCAGGTGATTCTGTTGTGTTTCTGAGGGCTGAAAATTGTGATCTTTGTATCGGAATTCGTAGGGCCAAGAGGGGAATTGGTGGTGGATCAGAAGCCCCATCAGGGTGGAGCTCTGGTGCTGGAAATTGCAGTATTGGACCTTATGGTGCATTTTCTGTTTTCTTGAGAGAGGATACCAAGATTTTGAGAAATGGTGTTGGGAACTCAAGTCCTTGCGGTGTTAATTTGAGTGGAAGTACAAAAGTGAGGCCAGAATCTGTGAGGGAAGCTATGGCACTGGCTGCTACCAATAAACCATTTGAATTTGTCTATTATCCGAGAGCGAGCACCCCGGAGTTTTGCATCAAGGCTTCAGCTGTGAAGGTGGCTATGAGAATTCAATGGTGCTCAGGGATGAGGTTTAAGATGGCCTTTGAAACTGAGGATTCTTCTAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTAGATCCTATCTGCTGGCCTAATTCCCCTTGGCGACTTCTTCAGGTTACTTGGGATGAACCTGATTTACTACATAATGTGAAGCATGTAAGCCCATGGTTGGTTGAATTGGTATCAAATGTGCCAGTCATTCATCTATTACCCTTCTCTCCGCCAAGGAAGAGGCTTCGGTTTCCACCATACTTGGACTTTCCCTATGATGTTCAATTTCCAATACCAATGTTTTCAGGCAACGCCATCGGGACTAGCAATCCCTTACGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGAAGCCAGGCATGCTCAAATTGGAAAACCTCTTTCAGATTTCCACTTTCACAATAATAAACTCCAGCTAAGGGTACTTCCAACTAACATTCAGCAGCTCAATTTCAATGCTGCTGGAATTTCTAATGGAAACATGATAAACCATGATAAGAGTAAAGAAAGCTTGTCATGGTTGCTGACCAATGAAAATTCTCATAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTACTTTTTGGTCAACCAATACTAACTGAGCAACAAATTTCCAGAAGAGGTTGTGATTTGTTGTCTCAGAATTGTAGTGCTGGGAAAGATTCACCAGATGAGAACAAGGACAAAGAAAAGAACTTTTCTGTTGACTCTCGATCTACACTTTCGCAGCAGTTTTCACCAGGAAAATCTTGTCTTACTGAGTCTTGGCAACTGGGGTTGGGTACTACTGGTCATTGTAAGGTTTTCATGGAGTCCGGAGATGTGGGAAGGACTCTAGACCTGACAAGTCTTGGTTCTTATGAAGAGCTTTACAGAAGACTGTCCAACATGTTTGGAATAGAAATGTCTGAGATGTTGAGCCATGTACACTACTGTGACACAACTGGTGCTGTTAAGCAAACTGGAGAAGAACCATTTAGTGACTTCAGGAAGACAGCAAAAAGATTGACAATTCTGATAGATTCAGGCAACAAAGATACTAAAAGGACTTGGATAGCAGGAACAACTGGGAATGCTGAGCAAGGATTGGATGCACCTAATAAGACAGGTCCTTTGAGCATATTTGCTTAA 2136 0.4316 MPMKESQKSLDPQLWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTDLDFGDSMSIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNSEVDYDANDDCDNASENSEKSASFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENCDLCIGIRRAKRGIGGGSEAPSGWSSGAGNCSIGPYGAFSVFLREDTKILRNGVGNSSPCGVNLSGSTKVRPESVREAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPICWPNSPWRLLQVTWDEPDLLHNVKHVSPWLVELVSNVPVIHLLPFSPPRKRLRFPPYLDFPYDVQFPIPMFSGNAIGTSNPLRCLSDNAPAGIQEARHAQIGKPLSDFHFHNNKLQLRVLPTNIQQLNFNAAGISNGNMINHDKSKESLSWLLTNENSHKSLEKSDNVKRHQFLLFGQPILTEQQISRRGCDLLSQNCSAGKDSPDENKDKEKNFSVDSRSTLSQQFSPGKSCLTESWQLGLGTTGHCKVFMESGDVGRTLDLTSLGSYEELYRRLSNMFGIEMSEMLSHVHYCDTTGAVKQTGEEPFSDFRKTAKRLTILIDSGNKDTKRTWIAGTTGNAEQGLDAPNKTGPLSIFA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1230 711 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Lal10g1230 711 ProSiteProfiles PB1 domain profile. 598 678 IPR000270 GO:0005515
Lal10g1230 711 Gene3D - 319 392 - -
Lal10g1230 711 MobiDBLite consensus disorder prediction 556 570 - -
Lal10g1230 711 Gene3D - 110 214 IPR015300 -
Lal10g1230 711 SUPERFAMILY DNA-binding pseudobarrel domain 106 216 IPR015300 -
Lal10g1230 711 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Lal10g1230 711 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal10g1230 711 SMART B3_2 112 214 IPR003340 GO:0003677
Lal10g1230 711 CDD B3_DNA 111 212 IPR003340 GO:0003677
Lal10g1230 711 Gene3D - 596 681 - -
Lal10g1230 711 MobiDBLite consensus disorder prediction 553 576 - -
Lal10g1230 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal10g1230 711 PANTHER AUXIN RESPONSE FACTOR 4 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1230 Lal-Chr10 18631524 18635382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1230 2 680 B3 DNA Binding Superfamily AT4G30080 55.443 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal10g1230 B3 2.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1230 - - gmx:100778135 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1230 10 18631524 18635382 Lal10g1230 10 18631524 18635382 ECH
Lal8g0149 8 1013683 1017579 Lal10g1230 10 18631524 18635382 ECH
Lal13g1500 13 14608534 14611815 Lal10g1230 10 18631524 18635382 ECH
Lal24g0889 24 7272787 7276678 Lal10g1230 10 18631524 18635382 ECH
Lal10g1230 10 18631524 18635382 Lal8g0149 8 1013683 1017579 LSH
Lal10g1230 10 18631524 18635382 Lal9g0276 9 1721226 1725148 PCT
Lal9g0276 9 1721226 1725148 Lal10g1230 10 18631524 18635382 PCT