Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1229 ATGAAGGACTCTTGGTTTTCCGACAATAATTTTATTGGTCTCCCAGATGAGGTTTTTAATGATGTCACCAACTTCTTTGATTTCCCCTTGGAAGATGTCGAAACTAATGTGGAGGAAGACTGGGATGTTCAGTTTAAACGACTTGAAGAGCCATGTTTTGATGTTTTTCATGTAACATCATCTGGCCTGTGTGGAAAAACTGAGCATAATCCACAGCTTGGGAGGAATTTCCCTACTTCTTGTAATGGAGCTCCCCAAATAAAGCAGCTTGCAAAAACTGCTGGACCTACATATGGAAAAACCATTCCCAAGTCGGATGTATCTTTCACTGGAAAACATTTGCATCAATTCCAAACGAACAGTCCAGTTTCAGTTTTTGAAAACAGTAGTTCTTCCTCAGCTGAGAATTCCAATTGTGGTCTACCTACCCTCTGCGTCAAGCGGACTCGAAGTAAACGCCAGCGTCCTTCAAGCTCCAGTCCTGTATTCTCAATTTCTTTCAACCCTACTTCACCTGCTTTGCAAAAATATCTAAAGACAACTGCCTCTGAATCAGATACAAGTCTTGCTGAGGAAAGGATCTCTTCCTGCTATGAGCTCAAGTCGAGAAACAAAGTTGAGAAACAAAAGGAAAAGGATCTCTCACTTCTTTCAGATCAAGTTGTGGTGAAGAGATCCGTAGCAAAGGGGCCAGTTGCGACCATAAAGTGCATGCATTGTGAGGTGAAAAAGACGCCACAATGGAGAGAGGGACCTATGGGTCCGAAGACCTTATGCAATGCTTGCGGTGTTCGTTACAGGTCTGGTCGCCTATATCCTGAATATCGGCCTGCAGTTAGCCCCACATTCGTACCGTCACTTCATTCAAACAGTCACAAAAAGGTCATAGAAATGAGAAGCAGAGACAAGCAGGAGGCTGTTTACAGTGTTTAG 933 0.433 MKDSWFSDNNFIGLPDEVFNDVTNFFDFPLEDVETNVEEDWDVQFKRLEEPCFDVFHVTSSGLCGKTEHNPQLGRNFPTSCNGAPQIKQLAKTAGPTYGKTIPKSDVSFTGKHLHQFQTNSPVSVFENSSSSSAENSNCGLPTLCVKRTRSKRQRPSSSSPVFSISFNPTSPALQKYLKTTASESDTSLAEERISSCYELKSRNKVEKQKEKDLSLLSDQVVVKRSVAKGPVATIKCMHCEVKKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAVSPTFVPSLHSNSHKKVIEMRSRDKQEAVYSV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1229 310 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Lal10g1229 310 PANTHER GATA TRANSCRIPTION FACTOR 19 301 - -
Lal10g1229 310 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Lal10g1229 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 294 - -
Lal10g1229 310 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Lal10g1229 310 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 19 301 - -
Lal10g1229 310 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Lal10g1229 310 Gene3D - 233 305 IPR013088 GO:0006355|GO:0008270
Lal10g1229 310 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1229 Lal-Chr10 18624135 18626871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1229 7 305 C2C2-Gata Transcription Factor Family AT1G08010 38.050 7.50e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal10g1229 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1229 - - lang:109342753 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1229 10 18624135 18626871 Lal10g1229 10 18624135 18626871 ECH