Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1224 ATGGTATCTGACGCGAGCAAGAAGAAGGCTGCACAGAAGAAAGCTGCGGCGGCGGCTAAGAGAGGAGGCAAGGCAGCTGCTGCTTCATCTAAGGCGGCGTCTGAGGTTGATAAGATCGCCAACGGAATCGGTGATATTCAGATATCCGATAGGAATTGCACCGGTGTTCTCTGCTCGCATCCCCTTTCTAGGGATATTCGGATAGAGTCTCTCTCAGTTACTTTTCACGGACATGATCTCATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGTTTAAATGGTTGTGGAAAATCTACCCTGCTTACAGCAATAGGTTGCAGAGAGCTTCCCATTCCAGACCACATGGATATATTTCACCTTTCTAGGGAAATTGAAGCCTCTGATATGTCAGCATTGGAGGCTGTCATGAATTGTGATGAGGAAAGGTTGAAATTGGAGCAAGAAGCTGAAGCTTTGGCTGCACAAGATGATGGGGGTGGTGAAGCCCTTGAGCGGGTTTATGAACGGTTGGAAGCCATGGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAGATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTCTAGCTCGAGCTCTATTTATGAAGCCAACCATTCTTCTACTTGATGAGCCAACCAATCACCTTGATTTGGAAGCCTGTGTGTGGTTGGAGGAGAATTTGAAGCATTTTGAGCGTATTCTGGTTGTAATTTCACACTCCCAAGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAGACAAAAAGCTGAAGCTCTACACTGGCAACTATGATCAGTATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCATCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCTGCAAAACTTGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCCAAAATGGAGCGGGGTGGACTTACAGAGAAGGTATCAAGAGACAAAGTCTTGGTATTCCGCTTTGTTGATGTAGGAAAACTCCCCCCACCCGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCGGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATCGCTCTAGTTGGACCCAACGGAGCCGGGAAGAGTACCTTACTGAAGCTAATGACAGGTGATTTAGTTCCATTAGACGGCATGGTAAAGCGCCATAATCACCTTCGAATTGCACAATATCATCAGCACTTGACTGAAAAGCTTGACATGGAAATGTCTGCTCTCCTATTTATGATAAGAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCAATTGGCAAATTTGGACTGACCGGTAAAGCACAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGTGTGGTATTCGCATGGTTAGCCTATAGACAGCCTCAGATGCTACTACTGGATGAGCCAACAAATCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTGATCAAAAAGTGACTAAATGGGATGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCTGGTTTATCTGACTGA 1779 0.4486 MVSDASKKKAAQKKAAAAAKRGGKAAAASSKAASEVDKIANGIGDIQISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIFHLSREIEASDMSALEAVMNCDEERLKLEQEAEALAAQDDGGGEALERVYERLEAMDAATAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKHFERILVVISHSQDFLNGVCTNIIHMQDKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVSRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPLDGMVKRHNHLRIAQYHQHLTEKLDMEMSALLFMIREYPGNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTKWDGDIMDFKKHLKAKAGLSD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1224 592 MobiDBLite consensus disorder prediction 1 30 - -
Lal10g1224 592 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524
Lal10g1224 592 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 592 - -
Lal10g1224 592 Coils Coil 142 162 - -
Lal10g1224 592 Gene3D - 341 590 IPR027417 -
Lal10g1224 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 592 IPR003439 GO:0005524
Lal10g1224 592 CDD ABCF_EF-3 377 569 - -
Lal10g1224 592 Pfam ABC transporter 84 238 IPR003439 GO:0005524
Lal10g1224 592 Pfam ABC transporter 393 524 IPR003439 GO:0005524
Lal10g1224 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 573 IPR027417 -
Lal10g1224 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 306 IPR003439 GO:0005524
Lal10g1224 592 PANTHER - 1 592 - -
Lal10g1224 592 SMART AAA_5 90 292 IPR003593 -
Lal10g1224 592 SMART AAA_5 402 590 IPR003593 -
Lal10g1224 592 Pfam ABC transporter 277 356 IPR032781 -
Lal10g1224 592 Gene3D - 66 330 IPR027417 -
Lal10g1224 592 CDD ABCF_EF-3 66 283 - -
Lal10g1224 592 Coils Coil 284 304 - -
Lal10g1224 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1224 Lal-Chr10 18574790 18579291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1224 377 572 Calmodulin-binding Proteins AT2G36910 25.991 3.34e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1224 K06185 - gmx:100785099 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1224 10 18574790 18579291 Lal10g1224 10 18574790 18579291 ECH
Lal10g1224 10 18574790 18579291 Lal8g0158 8 1077722 1082644 LSH