Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1222 ATGCAGAGATCAGGATATGGCTCAGATGGAATATACAGATCACTGAGACCTGAACTTATTGTCCCTAAAACCCACTCACTCGTTGATCATCTCTTCACTAAGGTTTCTTCATTTCCTTCCAAACTTGCTCTCATTGATGGTGACTCTAACGTTACCCTTACCTTCTCCCAACTCAAATCCTTAACTGCTAAACTCTCTCATGCTTTCATTCACTTAGGCCTCACCAAAAACGACGTCGTTCTCTTCCTTGCTCCTAATTCCATCTACTACCCTGTCCTCTTCCTCGCTGTCACCGCTATCGGCGCCATAGTCTCCACCGTCAACCCAACCTACACCCATATTGAAGTTTCCAAGCAAGTCAAGGACTCAAACCCAAAGCTTATTATCACTGTCACTGAATTGTTGGACAAAGTTCAAAACTTTAACCTACCCACCGTCATTATTGGTTCACATCAAGGTGGTTCGGATTCAAAGATTATTTCTTTGGACCAATTGCTTAATGGGGCTGATTACCCGACAGAGTTTCCGACCAACAACAACGTTAAACAGAGCGACACGGCGGCGTTGTTGTACTCTTCGGGCACCACCGGTGTAAGCAAGGGTGTGGTTCTGACTCACAGGAATTTCATTGCAGCGTCGGTTATGATGGGAATGGATGATGAACTAGCGGGTAGAATGCATGATGTGTATCTATGTGTTCTTCCAATGTTTCATGTTTTTGGGTTAGGGGTGATTTTATACACGCAGCTTCAACGAGGGAATTGTGTAGTGTCCTTGAAAAGGTTTGAGTTTGAATTGGTTTTGAAGACAATAGAGAAGTATAGAGTTTCACATTTGTGGGTTGTCCCTCCTATTATAATTGCTTTGGCAAAACATGGTTTGGTTGATAAGTATGATCTTAAGTCATTGATACATATCGGTTCTGGTGCTGCTCCTCTTGGCAAAGAGTTGATGCTAGAATGTGCCACACGTTTCCCTCATGCTACTGTTTGTCAGGGGTATGGTATGACTGAAACCTGTGGGGCTATTTCTCAAGAGAATCCAAGGAAGGGGGTTCGGAATACCGGCTCAGCAGGAAGCCTTGCTCCAGGCCTCGAAGCTCGAATAGTGAGCGTGGATACGTTGAAGCCCCTCCCTCCAACACAGCTTGGAGAGATATGGGTACGGGGTCCTAATATGATGCAAGGATATCACAACAATCTAGAGGCCACAAAATTGACCATCGATGAAAATGGGTGGGTACATACAGGAGATCTCGGATATTTTGATGAGGATGGGAATCTTTATGTTGTTGACCGTATCAAAGAACTCATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTCGATGCTGTTGTCGTCCCATATCCAGATGCTGAGGCTGGCGAGATTCCGATTGCATATGTTGTTCGTTCTCCCAGCAGTTCAATAACTGGGGAAGATATTCAGAAGTATATTGCTAAACAGGTTGCACCTTATAAAAGATTGCGAAGGGTGACATTCATCAACTCTGTTCCTAAGACAGCATCAGGAAAAATTCTCAGAAGAGAGCTTATTGACAAAGCACGATCCAAAATATAA 1617 0.4391 MQRSGYGSDGIYRSLRPELIVPKTHSLVDHLFTKVSSFPSKLALIDGDSNVTLTFSQLKSLTAKLSHAFIHLGLTKNDVVLFLAPNSIYYPVLFLAVTAIGAIVSTVNPTYTHIEVSKQVKDSNPKLIITVTELLDKVQNFNLPTVIIGSHQGGSDSKIISLDQLLNGADYPTEFPTNNNVKQSDTAALLYSSGTTGVSKGVVLTHRNFIAASVMMGMDDELAGRMHDVYLCVLPMFHVFGLGVILYTQLQRGNCVVSLKRFEFELVLKTIEKYRVSHLWVVPPIIIALAKHGLVDKYDLKSLIHIGSGAAPLGKELMLECATRFPHATVCQGYGMTETCGAISQENPRKGVRNTGSAGSLAPGLEARIVSVDTLKPLPPTQLGEIWVRGPNMMQGYHNNLEATKLTIDENGWVHTGDLGYFDEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVVPYPDAEAGEIPIAYVVRSPSSSITGEDIQKYIAKQVAPYKRLRRVTFINSVPKTASGKILRRELIDKARSKI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1222 538 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Lal10g1222 538 Gene3D - 9 435 IPR042099 -
Lal10g1222 538 CDD 4CL 21 530 - -
Lal10g1222 538 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Lal10g1222 538 Gene3D - 436 537 IPR045851 -
Lal10g1222 538 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 537 - -
Lal10g1222 538 Pfam AMP-binding enzyme 34 440 IPR000873 -
Lal10g1222 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 537 - -
Lal10g1222 538 SUPERFAMILY Acetyl-CoA synthetase-like 23 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1222 Lal-Chr10 18564202 18566653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1222 1 538 Monolignol Biosynthesis Gene Families AT4G05160 66.972 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1222 K01904 - gmx:100797843 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1222 10 18564202 18566653 Lal10g1222 10 18564202 18566653 ECH
Lal10g1222 10 18564202 18566653 Lal9g0288 9 1814908 1818853 PCT
Lal9g0288 9 1814908 1818853 Lal10g1222 10 18564202 18566653 PCT