Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1219 ATGGACAATCTGATGCACATTAATGACCATGATGTCATTGACGATCCCAACTTTGATCAGTTTATCAATGAAGATCTCATTTGTAACTTTGTTTCTGACCTTAACAACGATTGCTTCATTGATAACCAGTTCCAATCATGTGCTGGAACCCTAATATTTGATCATCAGACTAATGATAATAATAATAATACTGTTGTGAATGTTCATGATCAAATTCTAAGCTCTACATTGAGATCCCTCTCTTACTTTAATGGGAAGCTTACGGGAGAAGGAGAAGAAGAAGATGATGGAGTGGATTCTAGTTCAGTAGCAACAACTACTGCCAATGCAAAACCGAAGCAGAAAGCCGATAGGTCCAAGAGTACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGACACACTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATAATAGGAGATGCAGTACAATATGTGCATGGGCTTCAAGCACAAGCTAAGAAGCTGAAAGCTGAGGTTTCAGGACTTGAAACATCACTATTAGTGTCCGAAATTTGTCAAGGATCAATTAACAACTCCATAATGGTTCATGCCACCTACAACAGCCATCCAATATGCAAGAAAATCTTGCAGATGGATATGTTTCAAGTGGAAGAAAGAGGATATTATGCAAAAATAGTGAGCAATAAAGGAGAAGGAGCGGCTGCATCATTGTACAAGGCTCTTGAGTCCCTTAAAGGATTCAATGTTCATAATTCAAACTTGGCTACAGTTTCTGACAGTTTTCTACTTACATTTACATTGACTGTGAAAGTGAAAGGTTCTGACCCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTTACTGGTGCTCTTGTAAACCAAGGCTTTGAAGTCATGCCATTTTTCCATGCTCAACTTTGA 936 0.3889 MDNLMHINDHDVIDDPNFDQFINEDLICNFVSDLNNDCFIDNQFQSCAGTLIFDHQTNDNNNNTVVNVHDQILSSTLRSLSYFNGKLTGEGEEEDDGVDSSSVATTTANAKPKQKADRSKSTLISERRRRGRMKDTLYALRSLVPNITKMDKASIIGDAVQYVHGLQAQAKKLKAEVSGLETSLLVSEICQGSINNSIMVHATYNSHPICKKILQMDMFQVEERGYYAKIVSNKGEGAAASLYKALESLKGFNVHNSNLATVSDSFLLTFTLTVKVKGSDPEINLPNLKLWVTGALVNQGFEVMPFFHAQL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1219 311 MobiDBLite consensus disorder prediction 113 127 - -
Lal10g1219 311 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 8 305 - -
Lal10g1219 311 Gene3D - 108 183 IPR036638 GO:0046983
Lal10g1219 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Lal10g1219 311 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 305 - -
Lal10g1219 311 SMART finulus 123 172 IPR011598 GO:0046983
Lal10g1219 311 MobiDBLite consensus disorder prediction 88 127 - -
Lal10g1219 311 Pfam Helix-loop-helix DNA-binding domain 124 167 IPR011598 GO:0046983
Lal10g1219 311 Coils Coil 163 183 - -
Lal10g1219 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1219 Lal-Chr10 18551461 18554262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1219 4 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.750 1.34e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g1219 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1219 - - gmx:100805451 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1219 10 18551461 18554262 Lal10g1219 10 18551461 18554262 ECH
Lal25g0205 25 1398236 1401337 Lal10g1219 10 18551461 18554262 LSH
Lal10g1219 10 18551461 18554262 Lal8g0164 8 1118169 1120736 LSH