Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1218 ATGGATATGGAGGAACAGTTTGTGGAGTTGTGTCATAACAACAACGATGTCAACCATGTTGTCAAGGGGAAACGCACCAAGAGGCAGAGACCTTTGTCCCCTTGTGCCGTTGCTTCCACCGCCGTCACTTCTAGTTGCTCAACTGCTACTTCCGGTGGCGGTGATCATGGGTCGTTTTCTTCTCCCACAACCACTTTTGAAAAGGAAGAGGAAGATATGGCTAACTGCTTGATTCTATTGGCCCAAGGAAAAGGAGAAGGGAATGATGATGGTAACAACAAAGGCATGGCTATAACTTCAATCACAAATACAACTGCAATTCCGACCACAATTATAGATACAACCGTGACCACGACCGCAACCGCAACAAAAATTGGTTTGTACGATTATGAGTGCAAGACATGCAACAAGACATTCTCTTCCTTTCAAGCACTTGGTGGACACATGGCTAGCCACAAAAGGCCAAAGATGACTCTAGAGGAAAAGAAATTACCACTATCACTCTCATCTTTGTCATCAGGAATTTTCAAGTTCAAAGAAGCAAATCAAACCCATATCAAAAGTGGCCCTCAAATTCCAATTTCCCTTCAATTAGGTTGTGGTAACAATAAAGCTTTTCATGGGAACAAATCCAAATTTCATGAATGTTCTATTTGTGGGGCAGAATTTACATCTGGCCAAGCTTTGGGTGGCCACATGAGGAGGCATCGAACATCTACAAATTCTAGAACAAATACTAGTACTAACGTGGTGAACATGAGTGGTAGTAAGACAAGTTTTGATGCTGCTTCCACCACCGTGGAAGTTAAGCCCCGAAATGTTCTAGAATTTGATCTTAACCTTCCAGCACCAGATGCTGATATTAGTGATTCCAATTTTCAGTTTACGACAACCTCCAAATCTATGGTGCCTCCGGCTTTGGTGGGTTGCCGTTATTAG 939 0.4292 MDMEEQFVELCHNNNDVNHVVKGKRTKRQRPLSPCAVASTAVTSSCSTATSGGGDHGSFSSPTTTFEKEEEDMANCLILLAQGKGEGNDDGNNKGMAITSITNTTAIPTTIIDTTVTTTATATKIGLYDYECKTCNKTFSSFQALGGHMASHKRPKMTLEEKKLPLSLSSLSSGIFKFKEANQTHIKSGPQIPISLQLGCGNNKAFHGNKSKFHECSICGAEFTSGQALGGHMRRHRTSTNSRTNTSTNVVNMSGSKTSFDAASTTVEVKPRNVLEFDLNLPAPDADISDSNFQFTTTSKSMVPPALVGCRY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1218 312 SMART c2h2final6 130 152 IPR013087 -
Lal10g1218 312 SMART c2h2final6 214 236 IPR013087 -
Lal10g1218 312 PANTHER ZINC FINGER PROTEIN ZAT5 10 312 - -
Lal10g1218 312 MobiDBLite consensus disorder prediction 230 255 - -
Lal10g1218 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Lal10g1218 312 SUPERFAMILY beta-beta-alpha zinc fingers 130 236 IPR036236 -
Lal10g1218 312 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Lal10g1218 312 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Lal10g1218 312 Gene3D Classic Zinc Finger 109 184 - -
Lal10g1218 312 Gene3D Classic Zinc Finger 202 271 - -
Lal10g1218 312 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 10 312 - -
Lal10g1218 312 MobiDBLite consensus disorder prediction 240 255 - -
Lal10g1218 312 Pfam C2H2-type zinc finger 130 155 - -
Lal10g1218 312 Pfam C2H2-type zinc finger 214 238 - -
Lal10g1218 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1218 Lal-Chr10 18542256 18543194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1218 15 312 C2H2 Transcription Factor Family AT2G28200 39.677 1.61e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1218 zf-C2H2_6 7.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1218 - - gmx:100788646 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1218 10 18542256 18543194 Lal10g1218 10 18542256 18543194 ECH
Lal10g1218 10 18542256 18543194 Lal12g0788 12 6129885 6130991 ECH
Lal10g1218 10 18542256 18543194 Lal13g0896 13 6178285 6180093 ECH
Lal10g1218 10 18542256 18543194 Lal24g0712 24 5314441 5319520 ECH
Lal20g0117 20 767694 768548 Lal10g1218 10 18542256 18543194 ECH
Lal1g1797 1 20297015 20297863 Lal10g1218 10 18542256 18543194 ECH
Lal13g0896 13 6178285 6180093 Lal10g1218 10 18542256 18543194 ECH
Lal25g0208 25 1417109 1417975 Lal10g1218 10 18542256 18543194 LSH
Lal10g1218 10 18542256 18543194 Lal1g0404 1 2487392 2488330 PCT
Lal10g1218 10 18542256 18543194 Lal2g0316 2 1887267 1888184 PCT
Lal10g1218 10 18542256 18543194 Lal9g0297 9 1909193 1910110 PCT
Lal1g0404 1 2487392 2488330 Lal10g1218 10 18542256 18543194 PCT
Lal2g0316 2 1887267 1888184 Lal10g1218 10 18542256 18543194 PCT
Lal9g0297 9 1909193 1910110 Lal10g1218 10 18542256 18543194 PCT