Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1217 ATGTTTCCTTTTAACTCTAGTGGCTTAGGTTCTTCTTCACACCCTAGCTCACTTCTCTTCAATCTCTCTGGTCTCAAGGAGAAGCTTAGTCAAGTGCAGACCCTAGTTGGTGTTATTCTCTCCCCAAATCAGAGTTTACCCGATTCAACTTCCATGGCTATATCAAGCATGATCTCCACAATCCATGAAATCATTGTCACTGCCACTTCAATGATGTATACTTGTCAACACATGATGGGTCCTCCAGGTACTTCAACTACTAATGCTTGCACCAAGGAATTGCAAGGTCAGCAAATTATTGCTCAATCAAATTTGGGTAATAATAATAAACTTGTGCTTCGTAACATAGCCACAGATAATAGGGAATTGTTAACGAATACCCTTAACAGACCCCTAGATAATATTAGAAGTCAAGGTTTCTTTTCTAGTACCGAGTCTGAAGCCTTGGATTGGTTTAGTCAAACCTATAACAACAATAATAGTAGTAGTAGTAATGTTAATAATTGTAACCTTAAGGATGAAGTTGCAATCAGTGGAAACAATAATGTGCCACTAGAGGGTCATGAAAACGATAAAGGCTATAGAAGAGGTCTTAGTCCTTCACAAAAGAACCATGATATAATTGAATTGAATGCTGCTGATTTGTTGGCTAAGTACACACATTATTGCCAAATTTGTGGTAAGGGGTTTAAGCGTGATGCGAATTTGAGGATGCATATGAGAGCTCATGGAGATGAATACAAGACTAGTGCTGCATTGAAAAACTCATTGGGTAGTGTTAAGCCCAACAAATATTCATGTCCTCAAGAAGGGTGTAGGTGGAACCTAAAACATGCAAAGTTTCATCCTTTGAAGTCCATGATTTGTGCAAAGAATCATTACAAGAGAACACATTGCCCCAAGATGTACGTGTGCAAGAGGTGTAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACATGAGAAGCATTGTGGGGACCTCATCAAGTGGCATTGCTCGTGTGGCACTACATTTTCTAGGAAAGACAAACTTATGGGACATGTTGCTTTGTTTGTGGGGCACCAACCAGTGCAGCTTGTGTATTTGTATGAACACTTGGGATTGTGCATTCGTTATTCAATTCTGGTCTTTCTCCATACACTTGGCTCCAAGAGATTGTGGCGCTGGGCTTGGAACTTTGGGATGATGAATGGGATAATTTTTTGA 1212 0.3993 MFPFNSSGLGSSSHPSSLLFNLSGLKEKLSQVQTLVGVILSPNQSLPDSTSMAISSMISTIHEIIVTATSMMYTCQHMMGPPGTSTTNACTKELQGQQIIAQSNLGNNNKLVLRNIATDNRELLTNTLNRPLDNIRSQGFFSSTESEALDWFSQTYNNNNSSSSNVNNCNLKDEVAISGNNNVPLEGHENDKGYRRGLSPSQKNHDIIELNAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALKNSLGSVKPNKYSCPQEGCRWNLKHAKFHPLKSMICAKNHYKRTHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLIKWHCSCGTTFSRKDKLMGHVALFVGHQPVQLVYLYEHLGLCIRYSILVFLHTLGSKRLWRWAWNFGMMNGIIF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1217 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Lal10g1217 403 SUPERFAMILY beta-beta-alpha zinc fingers 219 246 IPR036236 -
Lal10g1217 403 PANTHER OS08G0562300 PROTEIN 10 360 - -
Lal10g1217 403 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 360 IPR044300 GO:0010044|GO:0010447
Lal10g1217 403 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Lal10g1217 403 Gene3D Classic Zinc Finger 203 271 - -
Lal10g1217 403 SMART c2h2final6 265 298 IPR013087 -
Lal10g1217 403 SMART c2h2final6 221 243 IPR013087 -
Lal10g1217 403 SMART c2h2final6 303 325 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1217 Lal-Chr10 18535324 18537187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1217 17 359 C2H2 Transcription Factor Family AT5G22890 46.893 1.43e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1217 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1217 - - gmx:100802769 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1217 10 18535324 18537187 Lal10g1217 10 18535324 18537187 ECH
Lal10g1217 10 18535324 18537187 Lal8g0165 8 1125564 1126769 LSH