Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1215 ATGGCGAAAGGTACAGATTCTGATGAGTTTGTGTTTCTCTCTAGGGTTCGTGCGGGTCTCAAGAGGGAGTTTCAATTTGCGATGAAGGCTCAATCTGAGATATGTAGTGGTGGTGGTTCTCTTGGTCGAACCCGTGCCAGTAAGAACAACTCGGATAGGGTTCCGGTTCAACACTCTCCAGCCCCTAAACGCTCCAGGAAAACCATTTCATTTAAGAATATGAAGGAGCCTCATGAATATGTCGTCAGCGAAGAGGAGGCTAAGAGTGATGTATTCGATGTTACAAGCGACGATGAACCGAAGAATCAAATTGGGGAATCCAAACTAGAAGGTTACGCTGCAATGCCAGTGGTTGCAATTAAGAATGATGTGGTTCAATCTCTGATCAGTGAAGTAATACCACACCGTGATGCGGTTGAATTTTTGAAGGAAGGGGTTGGGTGTGACATTGTGCATCCTGTGTGTGAAAATATGGTCAAAGAGGAAGAAACTGGTGTAGAAACCAGTGTTATACCGGTTTCGGTTAGCCATGATAGTGATGAGGGGAAGAATATTGTTCTGGAGAAACCATTGAGGCGGTTTGCAGGATTGGCGTTGAAGCAAAAATGTGATGAACCAAAGATTATGAATAATGAGGAAAATGCCAGTACCGTAGCAGTTGGAATTGATGATAATGTTACAAGGGAAATGACTCCAATGCTCATTTGTGAAGACGAACCAAAGAGTGATGTAATGGAAACTGTGATTAATGGAGAACTAATGAATGAAGAACCCCATGTGGTATCTTTGAAGGAAGGGGGCGTGGTTGAAATTGCACAGCATTTTTGTCAAACCGAGATCAAAGAGGAGCATGTGGTTTTGCAGGAGTTGGAGAAGGGAGGAACTGGTGCTCCAGTGGTCAATGTTATTAACGGGATAACCCCAGTTTTGGTTAATGGTGATATTAATAAGGTGAAGAAAATGGCTGTAGAGAAGGCAGTGAGGAGGTTTACGCGGTCGGCGTTGAAGCCAAAATGTGATGAAGCAAAGGTCATAAGTAATGGGGAATTTTTTAATGACATAGCACTTGAAATGGATGATAGCTTTAGAAGAGAAGCAGAAAATGTAACAATAATTACCACCCCAACTCTAACAAAAACGCCTCGCAGCAGTGCCTTAAAGAAGTTTCCGATCAGGCTAAAGGACCTTCTAGCCACCGGGATTCTCGAGGGTTTGCAAGTGAAGTATACCAGGGGTTTGAAGGCACGAAGACCTGACGAAAAAGGACTCGAAGGTGTGATAAGTGGCTCCGGAATTTTGTGCTTTTGCGAGACTTGTAAGGGCGTTGAGGTTGTCACACCCACCGTGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGCCCCCCAGAGTATATTTATCTTGAGAATGGGAATACCCTCCGTGATGTCATGAATGCTTGTTTGGGTCCGTTGGATACCTTGGAGGCAGCGGTTCAAAAGGTCCTTGGTGGCTTCACTGTGAAGAAATCTACCATCTGTTTTAACTGTAGAGGAGCTGGCAAGGGTGTGAAGAAACTGCTATGTGATTCATGCCTGGAGTTGAAAGACTCCCAACCTAGCCCCATTCAAACACCCGTCATAAGCAAAAAAAGTGCCCCAGTAGATGTTCAAACACCCGCTGTAAGCAATACAAGTGTTTCTGTAGCTGTTCAAACACCTACTATAAGCCATATAAGTGTTCCAGTAGCTGTTCAGTCCAGATCACCAGAACCAGCTGTGGTTCCAAAGTCATTAAACAATGGGATGAAGCACACAACATCTTGTGGTAAGAGTCAGGGAAAGCTAACTAGAAAGGATCTACGGTTGCATAAGTTGGTATTTGAAGAAAATGTATTGAAAGATGGAACAGAACTAAGCTACCATGCCCAAGGAAGGCCAGTATTGCTTGGTTACAAACAAGGATACGGAATTTATTGTTCATGCTGCGAGAAAGAGGTGGTCAGTGCCTCTCAGTTTGAAGCACATGCTGGTTGGGCATCTCGACGCAAACCTTACCTGCACATATACACACCTGAAGGAATCTCACTTCATGACTTGTCCATCACTTTATTGAAAGAAAGGAGGTTTTCTACCACTGAGAATGATGATCTCTGCACCATATGCCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCATATAGATTGTGTTCCTCTGCCATGCATTCCCAGTGGTACTTGGTATTGTAAATACTGCCAGAATAATTTCCAAATGGACAAACACGGCGAGCGTAATGGAAATGCAATGGACCGAAGATGCATTCGTGTTGTAAAAAGTGGAGAGGTTGATCATGGTGGATGTGCTTTGTGCAGAGGTCATTATTTCAGCAAGAGCTTTGGTCCTCGAACAGTGATTATTTGTGATCAGTGTGAAAAGGAATACCATGTTGGGTGTTTGAAGGATCATAACATGCAGAACCTAGAGGAATTGCCTGAAGGAAATTGGTTCTGTGGCACAAGTTGCAATCAAATTCATTCTACTCTAATGAATTTGGTGGTCGGGGAGAAGAATCTTCCAGTCCTGGATTCCCTTCTAAATTTGATTAAAAAGAAGCATGAAGAAAAAGGTTTAAAAACTGAGGTTGGTCTTGATATTAAATGGAGGGTTATGAACTGGAAATTGGCGGCTTCTGATGAAACTAGGAAGTTGCTTTCGAAGGCAGTTGCCATCTTCCATGAGCGGTTTGATCCTATAGTTGATTCTTCTTCTGGGCGTGATTTCATTCCAACAATGCTTTATGGAAGGAACATCCGTGGTCAAGATTTTGGTGGAATGTACTGTGCAGTGCTCAGTGTCAATGAAGTGGTCATTTGTGCTGGAGTATTTCGTATCTTTGGACCAGAAGTAGCAGAGCTTCCGTTAGTAGCGACGACTGGAGAATATCAAGGACAGGGTTACTTTCAGTGCTTGTTTTCATGCATTGAGAGGCTACTTGGATCATTAAACATAAGAAAACTTATCCTACCTGCTGCTGAGGAAGCTGAATCAATATGGACCAATAAATTTGGATTTACAAAGCTAAGCCAAGAAGAGATTAACAGTCACAGGAAATTTCATCATATTATGGTATTTCAAGGGACCTCATTACTACAGAAGCCTGTTCCTGCTGCACTTTGA 3171 0.4311 MAKGTDSDEFVFLSRVRAGLKREFQFAMKAQSEICSGGGSLGRTRASKNNSDRVPVQHSPAPKRSRKTISFKNMKEPHEYVVSEEEAKSDVFDVTSDDEPKNQIGESKLEGYAAMPVVAIKNDVVQSLISEVIPHRDAVEFLKEGVGCDIVHPVCENMVKEEETGVETSVIPVSVSHDSDEGKNIVLEKPLRRFAGLALKQKCDEPKIMNNEENASTVAVGIDDNVTREMTPMLICEDEPKSDVMETVINGELMNEEPHVVSLKEGGVVEIAQHFCQTEIKEEHVVLQELEKGGTGAPVVNVINGITPVLVNGDINKVKKMAVEKAVRRFTRSALKPKCDEAKVISNGEFFNDIALEMDDSFRREAENVTIITTPTLTKTPRSSALKKFPIRLKDLLATGILEGLQVKYTRGLKARRPDEKGLEGVISGSGILCFCETCKGVEVVTPTVFELHAGSANKRPPEYIYLENGNTLRDVMNACLGPLDTLEAAVQKVLGGFTVKKSTICFNCRGAGKGVKKLLCDSCLELKDSQPSPIQTPVISKKSAPVDVQTPAVSNTSVSVAVQTPTISHISVPVAVQSRSPEPAVVPKSLNNGMKHTTSCGKSQGKLTRKDLRLHKLVFEENVLKDGTELSYHAQGRPVLLGYKQGYGIYCSCCEKEVVSASQFEAHAGWASRRKPYLHIYTPEGISLHDLSITLLKERRFSTTENDDLCTICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMDKHGERNGNAMDRRCIRVVKSGEVDHGGCALCRGHYFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSTLMNLVVGEKNLPVLDSLLNLIKKKHEEKGLKTEVGLDIKWRVMNWKLAASDETRKLLSKAVAIFHERFDPIVDSSSGRDFIPTMLYGRNIRGQDFGGMYCAVLSVNEVVICAGVFRIFGPEVAELPLVATTGEYQGQGYFQCLFSCIERLLGSLNIRKLILPAAEEAESIWTNKFGFTKLSQEEINSHRKFHHIMVFQGTSLLQKPVPAAL 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1215 1056 ProSitePatterns Zinc finger PHD-type signature. 711 750 IPR019786 -
Lal10g1215 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 842 IPR013083 -
Lal10g1215 1056 Pfam Tify domain binding domain 643 692 IPR032308 -
Lal10g1215 1056 Pfam Tify domain binding domain 425 480 IPR032308 -
Lal10g1215 1056 CDD PHD1_AIRE 710 750 - -
Lal10g1215 1056 Gene3D - 882 1052 - -
Lal10g1215 1056 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 941 1030 IPR016181 -
Lal10g1215 1056 Pfam PHD-finger 711 752 IPR019787 -
Lal10g1215 1056 ProSiteProfiles Zinc finger PHD-type profile. 708 753 IPR019787 -
Lal10g1215 1056 MobiDBLite consensus disorder prediction 37 67 - -
Lal10g1215 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 770 IPR013083 -
Lal10g1215 1056 SUPERFAMILY FYVE/PHD zinc finger 780 836 IPR011011 -
Lal10g1215 1056 PANTHER AUTOIMMUNE REGULATOR 1 1051 - -
Lal10g1215 1056 SUPERFAMILY FYVE/PHD zinc finger 697 751 IPR011011 -
Lal10g1215 1056 MobiDBLite consensus disorder prediction 42 56 - -
Lal10g1215 1056 PANTHER AUTOIMMUNE REGULATOR 1 1051 - -
Lal10g1215 1056 SMART PHD_3 710 751 IPR001965 -
Lal10g1215 1056 SMART PHD_3 784 840 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1215 Lal-Chr10 18524139 18530477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1215 285 1052 PHD Transcription Factor Family AT2G36720 40.302 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal10g1215 TDBD 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1215 - - lang:109350941 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1215 10 18524139 18530477 Lal10g1215 10 18524139 18530477 ECH
Lal25g0209 25 1422225 1429014 Lal10g1215 10 18524139 18530477 LSH
Lal10g1215 10 18524139 18530477 Lal2g0319 2 1899173 1908504 PCT
Lal2g0319 2 1899173 1908504 Lal10g1215 10 18524139 18530477 PCT