Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1201 ATGGCATCATATGATAATTCCAACAACAACAATAACAAGGTTGATGATTGTTCTATATTGGCATCAGAACAAAAAGTGAAGAGAAAAAGAGGAAGACCTCGTAAATATGATGTTAATGGAAGTGTTTTGTCATCAACAACTTCAATGCCTTCAAGTGAAGATCATGGAATTGGATCCTCTTCTAAAAGAAGTAGAGGAAGGCCTCGTGGTTCAGCCAATAAACCTACCATAACCTCTACCCTAACAGAAACAAGAGGCGGAAGCTTCAGACCTCATGTGATGATTGTGAATAAAGGAGAGGATGTGGTGAGTAAGATATTAGCATTTTGTGAAAAGAATGTTAGAAAGGCTGCAGTTTCAGTAGTTTCTGCGACAGGTGCCGTATCAAGCGTTCTCATTCGCAATACTAATCAAACTTTGAGACGTGAGGGATGGTTTGAAGTTGTGTCTTTATCTGGATCATCATATAACTTTGTTGCTGATGATAGTGATAATTCACTTTGTAAAAAGGGAATGTTTACCATTTTACTCTCTGAACCTGATGGACGTATTTTCGGAGGTATCCTTGAAGGTTCTATGATAGCCGCTACCCCTATTCAGCTAATTGTGGCCAGTTTCAAGCAAAAGACAAGTAAGAAAACCAAGAAAATGCACTCAGCTGGATCTTCTGTTGCTGCACCAAATATTTCCACAACTACTAGTAATAATCCAGATTCAGAAAGGGTTCCTCTAAAACTTCCTTCAATAATAGAAGAAGGTAGTAGAATACCAGCAGAGAATCTCATTCATGCAACAACTACTACTACTACTAGTACTACTGGAGTATCAGAAAATGGCATTCTTGCAAATCAGAATATGAAATCTGAATCTATAAATGGTGTTGGGTTGGATAGTCAGGCCCTGCTGCTCATTACAGAACAAAGTAATGGTGCAGCAGATAACAATGCCAGTGTCTAG 957 0.3856 MASYDNSNNNNNKVDDCSILASEQKVKRKRGRPRKYDVNGSVLSSTTSMPSSEDHGIGSSSKRSRGRPRGSANKPTITSTLTETRGGSFRPHVMIVNKGEDVVSKILAFCEKNVRKAAVSVVSATGAVSSVLIRNTNQTLRREGWFEVVSLSGSSYNFVADDSDNSLCKKGMFTILLSEPDGRIFGGILEGSMIAATPIQLIVASFKQKTSKKTKKMHSAGSSVAAPNISTTTSNNPDSERVPLKLPSIIEEGSRIPAENLIHATTTTTTSTTGVSENGILANQNMKSESINGVGLDSQALLLITEQSNGAADNNASV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1201 318 MobiDBLite consensus disorder prediction 39 57 - -
Lal10g1201 318 Pfam AT hook motif 27 36 IPR017956 GO:0003677
Lal10g1201 318 Pfam AT hook motif 62 74 IPR017956 GO:0003677
Lal10g1201 318 PANTHER DUF296 DOMAIN PROTEIN 18 295 - -
Lal10g1201 318 Gene3D - 90 222 - -
Lal10g1201 318 ProSiteProfiles PPC domain profile profile. 86 228 IPR005175 -
Lal10g1201 318 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 213 - -
Lal10g1201 318 MobiDBLite consensus disorder prediction 214 242 - -
Lal10g1201 318 MobiDBLite consensus disorder prediction 1 18 - -
Lal10g1201 318 CDD DUF296 90 206 IPR005175 -
Lal10g1201 318 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 295 IPR039605 GO:0003680
Lal10g1201 318 MobiDBLite consensus disorder prediction 71 85 - -
Lal10g1201 318 MobiDBLite consensus disorder prediction 1 85 - -
Lal10g1201 318 MobiDBLite consensus disorder prediction 217 241 - -
Lal10g1201 318 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Lal10g1201 318 SMART AT_hook_2 27 39 IPR017956 GO:0003677
Lal10g1201 318 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 207 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1201 Lal-Chr10 18436626 18439915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1201 22 206 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 36.893 9.34e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1201 - - lang:109342242 352.443