Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1199 ATGTATCTTGTTATAGCAGGTCCGAATTCTAAGCCCGCAACCCAAGCAAGCGACACTACCCGTTACCGTACCGAGGTTAAGGTTGGTGAGGTTGTTAAGGTGGACCCAGAAGAAATTGAGGCCTATGTGCATCTTTCTCAGGCTGCTCTTGGCGAGTCTAAGAAAGACAAAGCAAATGAACCTGTGGTTCTTCACTTGAAAGTTGGTGACCAGAAAATTGTCTTGGGAACACTTTCCAGGGATAAAATCCCCCAGACAACTCTTGATGTAGTTCTGGACAAGGAGTTTGAGCTATCCCACAGTTCAAAAAGTTCTAATTCTGATGAGGATCTTCCATTGCCGACTGAAGAGAACGGAATTTCGGTTACAAAAGCTGAAGATGCAAAGGTTTCTGAACCTAAAAAGGCTGTTGCTAAGAATGGTGCGCCAATAAAACATGTCAAGATTGCTGATCCCAAGAAAGATGATTCTGATGACTCTGATGATGATGGTGATTTCAGAAGTTCTGATGATGAGATGGATGATGCTGATAGTGATGGTGATGAGGAAGGTGATAGTGATGATGATGAAGAGACCCCTGTTAAGAAGGTTGAACTTGGAAAAAAGAGGGCCAATGATTCTGCTTCAAAAACTCCAGTCTCCAACAAGAAAGCTAAAAATGCTACTCCTCAAAAGACAGATGGTAAGAAAGGTGGACATACAGACACTCCTCACCCTGTGAAGAAGGCTGGTAAGACTCCCAACAGTGATGGCAAGGGTCAAACCCCCAAGTCTGCCGGACAATTTAGTTGCGAAAGTTGTAAGAAGGCTTTCAACTCCGAAGATGGTAAGCAACAACATAAAAAGGCTAAGCATGGTCAGTGA 864 0.4363 MYLVIAGPNSKPATQASDTTRYRTEVKVGEVVKVDPEEIEAYVHLSQAALGESKKDKANEPVVLHLKVGDQKIVLGTLSRDKIPQTTLDVVLDKEFELSHSSKSSNSDEDLPLPTEENGISVTKAEDAKVSEPKKAVAKNGAPIKHVKIADPKKDDSDDSDDDGDFRSSDDEMDDADSDGDEEGDSDDDEETPVKKVELGKKRANDSASKTPVSNKKAKNATPQKTDGKKGGHTDTPHPVKKAGKTPNSDGKGQTPKSAGQFSCESCKKAFNSEDGKQQHKKAKHGQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1199 287 MobiDBLite consensus disorder prediction 156 189 - -
Lal10g1199 287 Pfam Nucleoplasmin-like domain 22 106 IPR041232 -
Lal10g1199 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 287 IPR013087 -
Lal10g1199 287 MobiDBLite consensus disorder prediction 1 20 - -
Lal10g1199 287 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 24 283 - -
Lal10g1199 287 MobiDBLite consensus disorder prediction 248 263 - -
Lal10g1199 287 MobiDBLite consensus disorder prediction 207 221 - -
Lal10g1199 287 MobiDBLite consensus disorder prediction 222 240 - -
Lal10g1199 287 Gene3D Nucleoplasmin core domain 20 108 - -
Lal10g1199 287 MobiDBLite consensus disorder prediction 190 205 - -
Lal10g1199 287 MobiDBLite consensus disorder prediction 97 263 - -
Lal10g1199 287 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Lal10g1199 287 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 24 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1199 Lal-Chr10 18423427 18426148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1199 22 101 C2H2 Transcription Factor Family AT3G44750 56.250 9.77e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1199 - - lang:109358867 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1199 10 18423427 18426148 Lal10g1199 10 18423427 18426148 ECH
Lal25g0218 25 1500949 1503697 Lal10g1199 10 18423427 18426148 LSH
Lal10g1199 10 18423427 18426148 Lal8g0175 8 1185457 1186467 LSH
Lal10g1199 10 18423427 18426148 Lal2g0330 2 2004459 2007338 PCT
Lal2g0330 2 2004459 2007338 Lal10g1199 10 18423427 18426148 PCT