Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1193 ATGAATCTCCTTGTTTTGTTCCTCGACCCCCACATTTGGGTGTTAACCATTTCTTTTTTGTCACCAATTCTTCATTCTTCAAATGCAAATGCACAAGCTGAATCTCCAGGAACTCAGGATGTCAGAGTTGTGCACCGCCATAATTTGAATAAGAGAATTCTAGTAGCACTAATTGTTTGTTGTGTTCTACTTGGAGGAATCTTCATATTCTTATCATATGTCTGGTTCTGTAGACATAAAATCTTAAGATGCTCCAGCAGTAAAAGCCAAGGAACCATTGAGGCTGCAAAAGGGGAAAGCTTGAACCCTATTGATGCTAAACTTTACTACTCAAGGATGACAGATAAGAAGAGTCCTGTTGCTATTTTCGACTTTCGATTATTAGAGGCTGCAACAAATAGCTTTTGCAAAAGTAATATTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGAGCTCATTTTGACCAACATTTCAAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATATGGCATCAGAATATCATTAAACTTCTTGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCTTTGGAAATTCAATTGCATGGGCCTAACCGTGGATCGGCTTTAACTTGGTTTCTTCGGTTAAGAATTGCCGTTGATGTTGCTCGGGCATTGGAATATCTCCATGAACACTCCAATCCTCCTGTCGTTCATAGAGACCTAAAATCTTCAAATGTTCTTCTGGATTCTAACTTCAACGCCAAGTTATCAGATTTTGGACTTGCTATTGCCTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATGTGGCACCTGAGTATATATCACATGGTAAACTAACTGATAAGAGCGATGTTTATGCATTTGGGGTTGTACTTCTAGAACTTCTAACTGGAAGAAAACCCATGGAGAACATGTCCTCACACGAATACCAATCCCTTGTATCATGGGCCATGCCTCAGTTAACTGACAGAACAAAACTTCCAAGTATTCTGGATCCTGTTATCAGAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTATGTGTGCAACCAGAACCAAGTTATAGGCCACTAATAACAGATGTCCTACACTCCCTCATCCCTTTAGTACCTGTTGAGCTTGGAGGATCACCCAGAATTACTCAACCACTTCTCTCATAG 1266 0.3957 MNLLVLFLDPHIWVLTISFLSPILHSSNANAQAESPGTQDVRVVHRHNLNKRILVALIVCCVLLGGIFIFLSYVWFCRHKILRCSSSKSQGTIEAAKGESLNPIDAKLYYSRMTDKKSPVAIFDFRLLEAATNSFCKSNIMGESGSRIVYRAHFDQHFKAAVKKADSDADREFENEVSWLSKIWHQNIIKLLGYCIHGESRFLVYELMENGSLEIQLHGPNRGSALTWFLRLRIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGLAIASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSHEYQSLVSWAMPQLTDRTKLPSILDPVIRNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGSPRITQPLLS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1193 421 SMART serkin_6 135 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1193 421 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
Lal10g1193 421 ProSiteProfiles Protein kinase domain profile. 135 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1193 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Lal10g1193 421 Gene3D Transferase(Phosphotransferase) domain 1 208 406 - -
Lal10g1193 421 SUPERFAMILY Protein kinase-like (PK-like) 117 401 IPR011009 -
Lal10g1193 421 PANTHER RECEPTOR-LIKE KINASE 21 416 - -
Lal10g1193 421 Pfam Protein tyrosine and serine/threonine kinase 152 364 IPR001245 GO:0004672|GO:0006468
Lal10g1193 421 PANTHER OS01G0253100 PROTEIN 21 416 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1193 Lal-Chr10 18401510 18408107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1193 14 347 Receptor kinase-like Gene Family AT1G80640 47.059 7.51e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lal10g1193 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1193 - - gmx:100811491 689.878