Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1187 ATGAGTAGTAGTAGTTGTAGTTATCGCACTGCGATTCCAGGATCTTCGAGCGAAGAGGAAGTGGGTGAATCTTCTTCATCATTCTCAACTTCATCGCTCAATTTCTCTTCTGGAAACCCTAGAATCGAAGAAACTCGTGGCCTCATGCATCTTTTCCGTCACGATCCCAACTCTTCCCTATCATCTTCGCCTCCTCCTCCTCTTCCTGTTGATCGGAAACCTCTTGTTTGTGTTGTTGGAGTTCCAAATCATATGACTTATGCCGATTTCTGCCAATTCTCCGGTTCCTTTATTCACCATATCCTCGAGATGCGCATTGTTAGATTGGATGGCATGGATGACCAGTACAGTGTTTTAATACGGTTCAATGACCAAGACTCCACAGACAGCTTCTACAAGCATTATAATGGCCGCCGCTTCTCATCTCTTGAGGTGGAGGTTTGCCGTGTCCTTTTCACATTAGATGTGCAGTACACTGGTTCCATTGAACATGCGCAGCCATCTAATGCTACTTCAACTGAACAGCCTACATGTCCTGTCTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACTATATGCAATCATTCTTTCCACTGCTCGTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGTCGCTATTGTCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACAACTGAAAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGGTGTGGAAGATATAAAGAAGGGCATGCCATAATACACTGGAAAGAAACACACCATTGCTACTCCCTAGAAGTGGAAACCAAACGTGTTTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAATGGGTGTGGAAGCTGCAGCTGTGAAGATAATGGCATGAACGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTAGTCAACTTGAAAGCCAAAAATTATATTTTGAATCCTTATTAGAAGAAGTAAAAGAAGAAACTGAACAGGAAATTTCCATAGCTGTTCAGAAGGCTCTGAGTCTCAAAAAACCGAAGATTCAGGCCAAGATCGACAGAGTTAATAAAGAGAAGAAATTTCTGGATGACCTTAATGAGAACCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGTTACTTGAGATTGAAGAGAGGGACAAGAAAGCTTTAAAACTGGCAGATGTTAGAGTAGCCGGCTTGGAAGAGCAGCTTAGAGATCTAATGGCTTGTCTTGAGGGTAGTGAGAGGGTACAACAGCTGCAGGGGACAAATGAACTTAAAGATGGGATTCTCTTTGACATACCAAGAGAATCCTCATCAGTTAGTGCTTCTGAGCCAGGAAGAAATGCTTAA 1461 0.4155 MSSSSCSYRTAIPGSSSEEEVGESSSSFSTSSLNFSSGNPRIEETRGLMHLFRHDPNSSLSSSPPPPLPVDRKPLVCVVGVPNHMTYADFCQFSGSFIHHILEMRIVRLDGMDDQYSVLIRFNDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKEGHAIIHWKETHHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADNGCGSCSCEDNGMNEAILNSKVEAIVNEYNELLASQLESQKLYFESLLEEVKEETEQEISIAVQKALSLKKPKIQAKIDRVNKEKKFLDDLNENLVKNEEIWKAKLLEIEERDKKALKLADVRVAGLEEQLRDLMACLEGSERVQQLQGTNELKDGILFDIPRESSSVSASEPGRNA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1187 486 Coils Coil 387 407 - -
Lal10g1187 486 Pfam Zn-finger in ubiquitin-hydrolases and other protein 229 288 IPR001607 GO:0008270
Lal10g1187 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 220 IPR013083 -
Lal10g1187 486 ProSiteProfiles Zinc finger UBP-type profile. 212 305 IPR001607 GO:0008270
Lal10g1187 486 SUPERFAMILY RING/U-box 194 293 - -
Lal10g1187 486 SMART ring_2 178 217 IPR001841 -
Lal10g1187 486 Pfam BRCA1-associated protein 2 69 165 IPR011422 -
Lal10g1187 486 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
Lal10g1187 486 PANTHER BRCA1-ASSOCIATED PROTEIN 15 478 - -
Lal10g1187 486 SMART Zf_UBP_1 228 277 IPR001607 GO:0008270
Lal10g1187 486 CDD RING-H2_BRAP2 176 219 - -
Lal10g1187 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 300 IPR013083 -
Lal10g1187 486 MobiDBLite consensus disorder prediction 1 39 - -
Lal10g1187 486 Pfam Ring finger domain 177 218 IPR001841 -
Lal10g1187 486 CDD RRM_BRAP2_like 76 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1187 Lal-Chr10 18372284 18376887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1187 174 218 C3H Transcription Factor Family AT1G72220 48.936 2.31e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1187 K10632 - gmx:100794688 759.599