Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1177 ACTCTAACAGAGAAGATAGTTCTTTCTGACAACATGGTTCAATCAAAGAAATACAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGCCACCCTTTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAAACAGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCAGTTTTGATGAGTGGAAGAAACGCCAAAACAAATTTCCCAGTTACTGATAACAAGAAAATAAGCAATGATCACAGTTCATATTCTGAAGTTCTGAGTGCAAAGATAAAGAAGTGTTGCAAGTCCCCTTCACCTTCCTTAACTTGTCTAAGGCTTGACACTGAGAATTCCCATATTGGTGTATGGCAGAAGCGTGCAGGGTCTAGTTCTGAATCAAATTGGATCATGATGGTTGAGTTTGAAAGCAAGAAGAATATTAATAATAATGGAGCTTATGATTCAAAGTTACAAGTGCAAAACACCACAGATAAGGTTAAAGCAGAGGAAAACAGCATTAATGGGTTGGATGAGGAGCAGAGAATGACACTGCAGATGATAGAGGAACTTCTGAATAGAAACTAA 582 0.4003 TLTEKIVLSDNMVQSKKYRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPVTDNKKISNDHSSYSEVLSAKIKKCCKSPSPSLTCLRLDTENSHIGVWQKRAGSSSESNWIMMVEFESKKNINNNGAYDSKLQVQNTTDKVKAEENSINGLDEEQRMTLQMIEELLNRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1177 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 193 - -
Lal10g1177 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 12 193 - -
Lal10g1177 193 Coils Coil 158 178 - -
Lal10g1177 193 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Lal10g1177 193 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 Pfam AP2 domain 17 61 IPR001471 GO:0003700|GO:0006355
Lal10g1177 193 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1177 Lal-Chr10 18317403 18318179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1177 12 193 AP2-EREBP Transcription Factor Family AT1G15360 60.302 6.32e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal10g1177 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1177 - - gmx:100785898 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1177 10 18317403 18318179 Lal10g1177 10 18317403 18318179 ECH