Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1148 ATGGCCACGGAATTAGGTCTTGGACTTGAAATCACGGAGCTAAGGTTAGGTCTTCCGGGTGGGGAACCTATGCATGCTGATAAGAATGAAAGGAAGAGGGTGTTCTCTGAGATTGAAGGTGGTGGCGATGAAAACAGCTCCTCCGGTGACGGGAAAATGCCGACAAAGATTCAAGTGGTGGGGTGGCCTCCGGTGTGCACATACCGGAAGAAGAATAGCATGAATGAAGCTTCAAAACCTTATGTGAAGGTTAGCATGGATGGTGCACCATTCTTACGTAAAATTGATTTAGGTATGCATAAGGGGTACTCAGAGTTAGCCATGGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATCAGTGAGGCATTGAAGGATGTTGATAATTGTGAAGAGGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGACCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGCGCTTCGGTCTGCCACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAGTGA 567 0.4603 MATELGLGLEITELRLGLPGGEPMHADKNERKRVFSEIEGGGDENSSSGDGKMPTKIQVVGWPPVCTYRKKNSMNEASKPYVKVSMDGAPFLRKIDLGMHKGYSELAMALEKLFGCYGISEALKDVDNCEEVPIYEDKDGDWMLVGDDPWEMFIESCKRLRIMKRSDAKRFGLPPKGSLKGFIEGVTK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1148 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 178 IPR003311 GO:0005634|GO:0006355
Lal10g1148 188 Pfam AUX/IAA family 51 169 IPR033389 -
Lal10g1148 188 SUPERFAMILY CAD & PB1 domains 72 164 - -
Lal10g1148 188 Gene3D - 73 174 - -
Lal10g1148 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Lal10g1148 188 PANTHER AUXIN-RESPONSIVE PROTEIN 8 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1148 Lal-Chr10 18177786 18180294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1148 71 186 B3 DNA Binding Superfamily AT4G23980 34.483 5.19e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal10g1148 AUX_IAA 2.2e-41 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1148 K14484 - gmx:100811879 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1148 10 18177786 18180294 Lal10g1148 10 18177786 18180294 ECH
Lal25g0272 25 1868738 1874259 Lal10g1148 10 18177786 18180294 LSH
Lal10g1148 10 18177786 18180294 Lal8g0226 8 1518838 1520359 LSH