Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1124 ATGGGTGGCATAGCATTCGGACGTTTTGATGACTCCTTCAGTTTGGGTTCCATAAAGGCCTATCTGGCTGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCTGCTGTTGGTTCAGCCATAGCATATGGTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTAGTAGCAGTTGCTGTTGCTCATGCTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGTGCCAACATTTCTGGTGGTCATGTTAACCCAGCTGTTACTTTTGGTTTGGCTATTGGTGGCCAAATCACAATCCTCACTGGTATTTTCTACTGGATTGCTCAGCTTCTTGGCTCCATAGTGGCTTGCTTTCTCCTCAAGTTTGTCACTGGAGGCTTGGCAATTCCTATCCACAGTGTAGGTGCTGGAGTTGGAGTTGCTGAAGGAGTTGTTACTGAGATCATTATCACATTTGCATTGGTGTACACTGTTTATGCAACAGCAGCTGACCCAAAGAAGGGTCCATTGGGCACCATTGCACCCATTGCTATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCTGGAGGCTCAATGAACCCTGCAAGATCTTTTGGCCCTGCAGTTGTTAGTGGTGACTTCAGTGGTCACTGGATCTATTGGGTTGGACCTTTGATTGGTGGTGGTTTGGCTGGTGCTATCTATGGCTATATTTTCCTTCCTTCTGAGCATGAACCTTTGGCTACTGATTTTTGA 747 0.4605 MGGIAFGRFDDSFSLGSIKAYLAEFISTLLFVFAAVGSAIAYGKLTSDAALDPAGLVAVAVAHAFALFVAVSVGANISGGHVNPAVTFGLAIGGQITILTGIFYWIAQLLGSIVACFLLKFVTGGLAIPIHSVGAGVGVAEGVVTEIIITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSGHWIYWVGPLIGGGLAGAIYGYIFLPSEHEPLATDF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1124 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lal10g1124 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Lal10g1124 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g1124 248 PANTHER MIP PROTEIN 1 248 - -
Lal10g1124 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Lal10g1124 248 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1124 Lal-Chr10 18039161 18041064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1124 1 248 Major Intrinsic Protein MIP AT3G16240 82.400 1.59e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1124 K09873 - rcu:8273814 405.216