Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1115 ATGGATCTTATACAGCAATGCAGTTTGAAAGTACCACTACACATTCTTATATTTCTGCTTCAAATTCACTTCATTTCTACTTACCCCACACCAATGAAATGTTCTGACACAACCCGCATTTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAAGCACACTATGGCTTTGATACAAAGCATGTTTGATGTGTTGCCAAGTGACATAACTGTTGAAAGCAATGGCTGGGATTACATATTCATCAGAAAAAACTGTTCTTGTGCTTCTGGTATGAACAAATATGTGTCTGACACTACATTCACTGTAAGATCTAATGAAGGGTTTGTGAATGAGTTGGTGATGGATGCATATGACGGACTTGCTTTCTTGCCCAACAAGACTCGTTGGGCAAGAAAGGGTTCGGTGATTTCGCTGAGGTTGTTCTGTGGCTGCTCCAGTGGAGTGTGGAACTATCTGGTGAGTTATGTGATGAGAGATGGGGATAGTGTTGAATCCTTGGCAAGCAGATTTGGAGTTAGTATGGATAGTATTGAGACAGTAAATGGCATAGACAATCCAGATAGTGTCACTGTTGGTTCTTTGTATTATATTCCTTTGGATTCTGTTCCTGGTGATCCTTATCACCTGAGGAATGATACTACTCCGGTTCCTGTCCCTTCTCCATCTGTCAATGATTTTTCAGTTGATGAAGTCAATCACAAGGCTAATGTACCCTATAGATGGATCATTGGGGGTTTAGGGGTTGGTCTTGCTCTGATATTATTAAGCATGCTTCTTTGTGTTTCCCTAAGGTCATCGAATTGTTTTGATGAAGCTAGAAATCATGCGAAAGACGCCGAGGGCAAGGTCTCTCATAAATTCTATATTCTTGGGAATCCATGTTTGTCTTTTGGTTCTGGAAGGTACATATGTGGCAAACCTGTAGAACAGAAGAAAAGTGATGGTGAATCCAGCAATCACCAAATCACAATTCCCATTGCTTCAACTCTAGGACCTGATGAATTTGTCATGGATAAGCCTTTAGTTTTTGCATATGAAGAGATTTTTGCTTCAACTGATGGTTTCTCTGATTCGAATCTGCTTGGACACAGAACATATGGTTCTGTTTACTATGGCTTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACATATACTAAGACTAAAGAATTTATGTCAGAGATGAAAGTTCTATGCAAGGTTCATCATGCTAATCTGGTGGAATTGATTGGCTATGCAGCTAGTCATGGTGAGCTTTTCCTCATATATGAATATGCTTCAAAGGGTTCCCTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCCTCACTTTCTTGGATCACGAGGGTCCAGATTGCTCTCGACGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCATTACATCCATCGAGATATCAAGACACGCAACATTTTACTTGATGGATCATTTAAAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAATAGGTAAAACAAAGGAGGGAGAAACCCCAAACACCAAAGTTGTTAGTACATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCTTTGCGACAACTAAAAGTGATGTATATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGATTCCATCATTCAAACCGAAGGCACGGTGACACAAAATATTGAAAGGCGTTCGCTGGCATCTATTATGTTGGCAGTTCTAAAGAACTCACCTGATTCCATGAGCATGTCAAGTATGAGAGACTACATTGATCCTAATATGATGAATCTGTATCCCCATGATTGTGTATTTAAGATGACAATGCTGGCAAAGCAATGTGTGGATAGTGATCCTATTTTAAGACCTGATATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTCCTATCTTCTGTTGAGTGGGAAGCTACTCTAGCTGGTAATAGCCAAGTATTCAGTGGGCTTGTTCAAGGAAGATAG 1998 0.4004 MDLIQQCSLKVPLHILIFLLQIHFISTYPTPMKCSDTTRICTSFLAFKPQPKHTMALIQSMFDVLPSDITVESNGWDYIFIRKNCSCASGMNKYVSDTTFTVRSNEGFVNELVMDAYDGLAFLPNKTRWARKGSVISLRLFCGCSSGVWNYLVSYVMRDGDSVESLASRFGVSMDSIETVNGIDNPDSVTVGSLYYIPLDSVPGDPYHLRNDTTPVPVPSPSVNDFSVDEVNHKANVPYRWIIGGLGVGLALILLSMLLCVSLRSSNCFDEARNHAKDAEGKVSHKFYILGNPCLSFGSGRYICGKPVEQKKSDGESSNHQITIPIASTLGPDEFVMDKPLVFAYEEIFASTDGFSDSNLLGHRTYGSVYYGFLRDQEVAIKRMTYTKTKEFMSEMKVLCKVHHANLVELIGYAASHGELFLIYEYASKGSLRSHLHDPQNKGHSSLSWITRVQIALDAARGLEYIHEHTKTHYIHRDIKTRNILLDGSFKAKISDFGLAKLIGKTKEGETPNTKVVSTYGYLAPEYLSNGFATTKSDVYAFGVVLFEIISGKDSIIQTEGTVTQNIERRSLASIMLAVLKNSPDSMSMSSMRDYIDPNMMNLYPHDCVFKMTMLAKQCVDSDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1115 665 Gene3D LysM domain 148 204 IPR036779 -
Lal10g1115 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lal10g1115 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1115 665 SMART LysM_2 154 198 IPR018392 -
Lal10g1115 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 665 IPR044812 GO:0019199|GO:0045087
Lal10g1115 665 PANTHER BNAA06G02020D PROTEIN 32 665 - -
Lal10g1115 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Lal10g1115 665 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Lal10g1115 665 SUPERFAMILY Protein kinase-like (PK-like) 336 637 IPR011009 -
Lal10g1115 665 Pfam Protein tyrosine and serine/threonine kinase 360 635 IPR001245 GO:0004672|GO:0006468
Lal10g1115 665 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
Lal10g1115 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1115 665 CDD LysM 153 197 IPR018392 -
Lal10g1115 665 SUPERFAMILY LysM domain 153 198 IPR036779 -
Lal10g1115 665 Pfam LysM domain 155 192 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1115 Lal-Chr10 17971232 17977089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1115 31 665 Receptor kinase-like Gene Family AT1G51940 64.541 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lal10g1115 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1115 - - gmx:100796989 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1115 10 17971232 17977089 Lal10g1115 10 17971232 17977089 ECH
Lal10g1115 10 17971232 17977089 Lal20g1145 20 15875544 15883149 PCT
Lal10g1115 10 17971232 17977089 Lal1g1331 1 15080003 15087740 PCT
Lal20g1145 20 15875544 15883149 Lal10g1115 10 17971232 17977089 PCT
Lal1g1331 1 15080003 15087740 Lal10g1115 10 17971232 17977089 PCT