Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1114 ATGGATGAGAGGTCAAGAAATGAGGTTTCTCCTCAGCTTTTGGATTTGATATCAAATGAGAGAGAATGGAACATGAACAAAGGTGAAGGAAAGTGTTCAGAGGAGAGGGAACTTGAACTCAGGCTTGGTCCACCTGGTTGTGAAGATAAAATGAAAAACAACATCAACAATAACACTAGTACTACTGAAAGAGATCACTCTCTACTTTCTCTTGGTTACTTTCCCAATAATGGTTTTCAAAAACAGAATCTTTCTACTTCTGATATTCCAGTTAAGGCTATTTATCACTCTCCATGGTCTTCTTCAACAAGTTACCACCACCAACATCAATATCAGGGTAATAATAAAGCTTCATCATTTCTTGTGATGGGAAATGATGCATCCCCTAAGGTGGTAGAACTGCAGGTTGGTGCTACTGAGAAGAAAGTGTTCTCTCCTTCTTCTGCAAATACAGCTGTTCCCAACAACACCTCTCAGAAAAGAAATGCTCCTGGTCCAGTGGTAGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCACTTCTAAGCCATCACATGATTCTTCTAAGCAGCAGCAACATGACAAGGTTGTTGGTAAGAAACATGTTGTTGATAACTATGGTATTGGTGGTAGTAAAGGTTTGTTTGTAAAGATCAACATGGATGGTGTTCCCATTGGTAGAAAAGTGGACCTCAATGCTTACTATAGCTATGAAAATCTCTCCTCTTCCGTGGATGAGCTTTTTAGAGGCCTTCTTGCAGTTGCATCTGTTTGTGTTGATGTCTTTATTATGTTGACAACATTGTTGGGATTTTATGAGTTTTGTTCAGCTCAAAGAGATTCCTGTGGTGGTGGTGGAGTTAACAACAAGAAAGATGAAGAGAAACCCATTACAGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGAATGCTTGTTGGAGATGTGCCATGGCATATGTTCCTATCAACAGTAAAGAGGCTAAGGGTGTTGAAGAGTACTGAGCTTTCTGCTTTTACACTTGGTAGTAAGCAAGAGAAGATACCAGTTGACTCAGCAATGAAATGA 1107 0.4011 MDERSRNEVSPQLLDLISNEREWNMNKGEGKCSEERELELRLGPPGCEDKMKNNINNNTSTTERDHSLLSLGYFPNNGFQKQNLSTSDIPVKAIYHSPWSSSTSYHHQHQYQGNNKASSFLVMGNDASPKVVELQVGATEKKVFSPSSANTAVPNNTSQKRNAPGPVVGWPPIRSFRKNLASSSTSKPSHDSSKQQQHDKVVGKKHVVDNYGIGGSKGLFVKINMDGVPIGRKVDLNAYYSYENLSSSVDELFRGLLAVASVCVDVFIMLTTLLGFYEFCSAQRDSCGGGGVNNKKDEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFLSTVKRLRVLKSTELSAFTLGSKQEKIPVDSAMK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1114 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 359 - -
Lal10g1114 368 MobiDBLite consensus disorder prediction 177 191 - -
Lal10g1114 368 Gene3D - 214 357 - -
Lal10g1114 368 SUPERFAMILY CAD & PB1 domains 214 343 - -
Lal10g1114 368 ProSiteProfiles PB1 domain profile. 218 346 IPR000270 GO:0005515
Lal10g1114 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 359 IPR003311 GO:0005634|GO:0006355
Lal10g1114 368 MobiDBLite consensus disorder prediction 144 202 - -
Lal10g1114 368 Pfam AUX/IAA family 37 350 IPR033389 -
Lal10g1114 368 MobiDBLite consensus disorder prediction 144 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1114 Lal-Chr10 17960559 17964591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1114 222 357 B3 DNA Binding Superfamily AT4G23980 27.941 1.05e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal10g1114 AUX_IAA 1.1e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1114 K14484 - gmx:100804593 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1114 10 17960559 17964591 Lal25g0308 25 2113729 2118841 ECH
Lal10g1114 10 17960559 17964591 Lal10g1114 10 17960559 17964591 ECH
Lal25g0308 25 2113729 2118841 Lal10g1114 10 17960559 17964591 LSH
Lal10g1114 10 17960559 17964591 Lal8g0266 8 1793415 1797689 LSH