Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1111 ATGGCATCTCAAGTTTCACTTCATCAGAAATTGTTGTCAACTTCAATGGATGATATGAGTTGGGATGCTTCACAACTTGTTTCTAACATTCCAATCTTGTGGAGCACTCATGAGCAGCAGCAAGACCTAGAGGGAGGAGGCTACTACATGCCAAATCCAATTAGTTCAAGTGGTGTTAATCAAATTCAAGAGATGCACAAGGCTCAAACAGAAGCTGGTACCACTACTGATGAGATAATAATGAGTATCATGATGCCTAACACAAATCTGTCACAAAGAACAGCAACAACCATGCTGGTTAAATCAGCAGCATTTGGAGCCAGTTTGGAATTAGAAGCTTTCACATCTAAATCATGCCACCAGTCCCTTTCAGTCAATATGATGAACAATTATGTGCCAAATTTCAGCATGGCCCACAAACAACAACTTCTAATCAATAATGGCACACTACAAAACACCAATGTTAACAACATTCTTGATCATTGCTTGCTTTCCACTACTAATAGTATCATCAGCACAAATAACAAGTCTGTAGAAGATGGTGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACAACAACTTCAGTTATGGAAACAGTGCTACAATTTCCTCTGGTGAATCTGAGAGTAATACTTCCAATACTAGAGACAAAAACATGCAGGAGTATCATCATGTCAATGAACTTGATGAAACACTATCTCAAAGCTCCTCAGATCATTATGTAAGTCAAACAAAAATCGTAAACTCTTCTAAGGTTAATAATTGCACAACAAAAAGGAGTAATGATGATATTCAGTATGACCCATACTTCAATGTTCTTCAGAACTCTTCTGCTAATAATACTGAAGGTGGTGGTTTCAAGCTTATCTCAGAGAATGCACCAAAATCCAAGAAACCAAGATGGGATCATAAGCATCCTTGTTCATCTACTATAAGTTTCAAGCAGCCAAACTCATCATTCAATGAAGAACCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTCAGGCCAGTGAATTTGGGCTTGGAGGTTGTGGAAAAGCCTAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACAATGGCTGCAAGGCAAAGAAGGGAGAGGATAAGTGAGAGGATTAGGGCTTTGCAGAAGATTGTGCCAGGTGGAAGCAAGATGGACACGGCTTCAATGCTCGATGAGGCTGCTAATTACCTCAAGTTTCTCAGATCACAAGTGAAATCACTAGAGAGTCTAGGGAATAAAGTTGATGCAATGAATAATTACCCTCCTTCCAGTTTTGCATTCTCTTTCAACCCTACTTTCCCCATGCAAACTCAATTCCACATCCATAACCCTAGCTACCCACAATATTCAACATTCCCAGGGATGAAATGA 1419 0.3946 MASQVSLHQKLLSTSMDDMSWDASQLVSNIPILWSTHEQQQDLEGGGYYMPNPISSSGVNQIQEMHKAQTEAGTTTDEIIMSIMMPNTNLSQRTATTMLVKSAAFGASLELEAFTSKSCHQSLSVNMMNNYVPNFSMAHKQQLLINNGTLQNTNVNNILDHCLLSTTNSIISTNNKSVEDGDGISMILSDCRNLWNNNFSYGNSATISSGESESNTSNTRDKNMQEYHHVNELDETLSQSSSDHYVSQTKIVNSSKVNNCTTKRSNDDIQYDPYFNVLQNSSANNTEGGGFKLISENAPKSKKPRWDHKHPCSSTISFKQPNSSFNEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISSDPQTMAARQRRERISERIRALQKIVPGGSKMDTASMLDEAANYLKFLRSQVKSLESLGNKVDAMNNYPPSSFAFSFNPTFPMQTQFHIHNPSYPQYSTFPGMK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1111 472 MobiDBLite consensus disorder prediction 298 312 - -
Lal10g1111 472 Pfam Helix-loop-helix DNA-binding domain 375 416 IPR011598 GO:0046983
Lal10g1111 472 MobiDBLite consensus disorder prediction 313 328 - -
Lal10g1111 472 MobiDBLite consensus disorder prediction 297 328 - -
Lal10g1111 472 Gene3D - 371 436 IPR036638 GO:0046983
Lal10g1111 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 416 IPR011598 GO:0046983
Lal10g1111 472 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 461 IPR045843 GO:0003700|GO:0006355
Lal10g1111 472 PANTHER TRANSCRIPTION FACTOR BHLH87 28 461 - -
Lal10g1111 472 Coils Coil 406 426 - -
Lal10g1111 472 SMART finulus 373 422 IPR011598 GO:0046983
Lal10g1111 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 432 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1111 Lal-Chr10 17935014 17936988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1111 162 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.164 8.95e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g1111 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1111 - - lang:109358246 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1111 10 17935014 17936988 Lal10g1111 10 17935014 17936988 ECH
Lal25g0311 25 2140449 2141837 Lal10g1111 10 17935014 17936988 LSH
Lal10g1111 10 17935014 17936988 Lal8g0270 8 1816945 1818210 LSH
Lal10g1111 10 17935014 17936988 Lal20g1122 20 15509394 15510524 PCT
Lal20g1122 20 15509394 15510524 Lal10g1111 10 17935014 17936988 PCT