Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1097 ATGAATGGTTTGATGTTCCAACAACAGCAGCAGCAGCAGCAAACATTACTAGTAGTGGAGGAAAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAACCAGAACTGAAATTGGTAACAGTAGCAATTACCCTCAACCTCAACAACAATACTTGGCTCCACCACCAAATTCTCAGGCTCAGCCTCAAGCTAAGAGAAAGAGAAACCTTCCTGGCAACCCAGACCCAGATTCTGAAGTTATAGCTTTATCTCCAAAGACTTTAATGGCAACTAATAGGTTCATATGTGAGATCTGTAAGAAGGGATTCCAAAGAGACCAGAATCTTCAACTTCATAGAAGAGGGCATAATTTACCATGGAAACTGAAGCAAAGAACAAACAAAGAAATAATTAGAAAGAAGGTGTATGTGTGTCCAGAAGAAAGTTGTGTGCACCATGATCCATCAAGGGCATTAGGGGACTTAACTGGGATAAAAAAGCACTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAGTATGCAGTTCAATCTGATTGGAAAGCTCACTCAAAGACATGTGGCACAAGGGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTGGCAGAAGAGAGTGCAAGAGGAGCCATACCCAACCACCATTCATCACTTCTTCAATCCTCTCATCTCCAAACTCATGATCAACACAATAATATTTTCTCATTGAAAAAAGAGCAACAAAGTTTCAATCTCATAAGTCCACAAATAATGCCCTCATGGCTTGGCCCACAAAGTAACAACAACAACAACAACAATAACAACACTCTTGATCTCTCTTCCACTTCATCAATCTTTTCCCATCATCATCAAGATCTAAGCAACCTCCATAATCAAACTTCAAACCCTAACCCTAGTAGTCTTGGACCCACTACTCTTCTTCCAGTTGTGCAGCCTGTGACTTCCCCACACATGTCAGCTACAGCATTGCTTCAGAAAGCAGCTCAAATGGGTGCAACCATGACCAAACCTTGTTCCTCACAACCCATCTTGAGGCCCCACGTCACTTCTTCTACCACCGCCACGGCTACGGCCACCGCAGGTGTTTCTCATTCTTCTTTCCTTCATCATGTTATGTTTGAAGGAACTTCTTTTGAGGATGCTTTTGGTGGCATTCTCAACTCAAACAATGAGAATAATATTCCTCCGAAAACAAACAATGGTGATGATGATGGTGGGAGAGGAAATGAAGCCATGACAAGAGATTTCTTGGGCCTTAAACCTCTCTCTCATAGTGATTTCCTCACCATTGCTAGCATGGGAAACTGCATGAACTCTTATAATTCCCATGATCAACAAAACCATTCCCAAAATCCGTGGCAAGGTTAG 1443 0.4227 MNGLMFQQQQQQQQTLLVVEENMSNLTSASGEASASSGTRTEIGNSSNYPQPQQQYLAPPPNSQAQPQAKRKRNLPGNPDPDSEVIALSPKTLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIIRKKVYVCPEESCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGAIPNHHSSLLQSSHLQTHDQHNNIFSLKKEQQSFNLISPQIMPSWLGPQSNNNNNNNNNTLDLSSTSSIFSHHHQDLSNLHNQTSNPNPSSLGPTTLLPVVQPVTSPHMSATALLQKAAQMGATMTKPCSSQPILRPHVTSSTTATATATAGVSHSSFLHHVMFEGTSFEDAFGGILNSNNENNIPPKTNNGDDDGGRGNEAMTRDFLGLKPLSHSDFLTIASMGNCMNSYNSHDQQNHSQNPWQG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1097 480 MobiDBLite consensus disorder prediction 26 85 - -
Lal10g1097 480 SUPERFAMILY beta-beta-alpha zinc fingers 98 196 IPR036236 -
Lal10g1097 480 Gene3D Classic Zinc Finger 154 233 - -
Lal10g1097 480 MobiDBLite consensus disorder prediction 26 71 - -
Lal10g1097 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Lal10g1097 480 SMART c2h2final6 99 121 IPR013087 -
Lal10g1097 480 SMART c2h2final6 141 171 IPR013087 -
Lal10g1097 480 SMART c2h2final6 176 196 IPR013087 -
Lal10g1097 480 Gene3D Classic Zinc Finger 78 151 - -
Lal10g1097 480 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lal10g1097 480 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 382 - -
Lal10g1097 480 MobiDBLite consensus disorder prediction 412 436 - -
Lal10g1097 480 MobiDBLite consensus disorder prediction 279 299 - -
Lal10g1097 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 382 - -
Lal10g1097 480 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1097 Lal-Chr10 17830423 17836773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1097 23 480 IDZ Gene Family AT3G13810 48.411 6.70e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1097 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1097 K25870 - qsu:111995117 528.48