Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1088 ATGCCACGGGGGAGGATAAGGGCGAAGCTCCGAAGGAGCCATCTTTACACATTCGGTTGTGTTCGCCCTACCACCACCGATGAGTTGCCTAACCCGCTTCATGGTCCTGGATTCTCAAGAACAGTATATTGCAACCAGCCTCAAATCCATGACAAGAGTTCTCTATTGTACTGCAGGAATAATGTATCAACCACCAAATACAATATTATCACATTTTTTCCTAAGGCACTCTTTGAACAATTTCGAAGGGTTGCTAATATATATTTCCTTTTGGCTGCGTGCTTGTCAGTCTCTTCGATTTCGCCGTTTAGTCCAGTGAGCATGATTGCTCCTTTGGGGTTTGTTGTAGGGCTTAGTATGGCGAAGGAAGCATTGGAAGATTTTCGCAGGTTCCTTCAGGATGTCAAAGTTAATGGCCGGAAAGCTGGCATCCATAAAGGTGATGGCGTTTTTGGTCCCAGGGCATGGCAGAATATTATGGTTGGGGATATCATAAAAGTGGAGAAGGACCAATTTTTTCCGTCGGATTTACTTCTCTTGTCTTCAAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGAGAGACCAACTTGAAGGTGAAAAGATGTTTGGAGGCTACCTTGTCTCTAGATAGTGATGAAGCTTTTAAGGGTTTCTCAGGAACAATACATTGTGAAGACCCAAATCCAAATCTTTATACTTTTGTTGGCAACTTTGAGTATGAGAATCAGGTTTACGCTCTTGATCCCAGTCAAATTCTCCTCCGAGATTCAAAGCTTAGGAATACTGATTATGTCTACGGGGTTGCCATTTTCACTGGTCACGACAGCAAGGTCATGCAAAATTCTACAAAATCCCCTTCAAAAAGGAGTACAATAGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTTCTTATCTTGATATCCATCATTAGTTCAATAGGATTTGTTGTGAAAACCAAGTACCAAGTCTCAAAGTGGTGGTACTTACGGCCTGACAATATTGAAGACCAGTATGATCCTCAGAGAATTGGATTAGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGATTGTGAAGGTATTACAAGCAACCTTCATTAACAAAGACATTTATATGTATGATGAAGCAACTGGGACTCCAGCTAATGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGATTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTGCGTGCTAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATGACTTCTGATATTGAGGAGAACTATTCTGATCTCTCTAATATCCCTGTGTCCAAGAGTAACACGCCATCAAAAAAGGTTACAGCGGGTGAAGAAATTGTACTGGAGAGTATTGTTACTTCCAAGGATGATGAGGATCAAAAGCCTCCCATAAAGGGTTTTGGTTTCGAAGACAACCGTCTCATGAATGGTAACTGGTTGAACGAACCCAACAGCGATGTTCTTTTGATGTATTTCCGGATATTAGCAGTTTGCCATACTGCAATTCCTGAGCTGAATGAAGATACTGACAGTATTACATACGAAGCTGAGTCACCTGACGAAGGGGCTTTTCTTGTAGCAGCTAAAGAATTTGGTTTTGAATTTTATAGAAGAACTCAATCCACTGTTGTAGTGCATGAAAGATTGGCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGTATGTCTGTGATTGCACGTGATGAGGAGGGAAACATTATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGATTGTCAAAGAATGGAAAACTCTATTTGGAGGCTACTACTAAACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTACAGAAAGCTTGATGAGCAAGAATTCTCTGATTGGGATAATGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGACAGAGAGGCGATGCTTGAGCAGTTATCAGATGGTATCGAAAGAGAGTTGATCCTTGTCGGGGCTACTGCTGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCCCAAGCTGGTCTAAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCGATCAACATTGGATTCGCTTGTAGTTTGCTACGACAGGGCATGAAGCAAATCTGTATCACTCTCCCAAATTCAGATTCGCTAACCAATGATAGCAAAGAGGTTATTAAAAGCAACATCTTGAAACAAATCAGCAATGCGTCACAAATGATACTTTTTGAGAAGGATCCACATGCGGCGTTTGCATTAATTATTGAAGGGAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCATCAGTTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATTTGCTGTCGCGTGTCTCCCAAGCAAAAGGCCTTGGTAACAAGGTTAGTGAAACAAGGAACTAGGAAGACCGCTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTTCTATTGCCCAATTTCGGTTTTTGGAGCGGCTTCTGGTAGTCCACGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGCTATTTCTTCTACAAAAATATAGCATTCGGCCTCACCATATTCTATTTTGAGGCATATGCTGGCTTCTCTGGTCAATCAGTTTATGAAGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTTCATCTGAAGTTTGCTTACAGTTTCCTGCACTGTACCAGCAAGGACCCAAGAATTTGTTCTTTGACTGGTATAGAATATTAGGATGGATGGGCAATGGTCTCTATACCTCCCTCGTCACCTTCTTCCTCATCATCATTATTTTCTACGACCAAGCATTCCGTGTGGATGGCCAGACTGCAGATATGGATGCTGTGGGTACCATAATGTTCACTTGCATCATCTGCACTGTCAATTGCCAAATTGCTCTCACAATGAGCCATTTTACATGGATTCAGCACCTTTTTGTGTGGGGCAGCGTAGTCACTTGGTATCTCTTTCTCTTGTTATATGGCATGCTTTCTCCGGTATATTCCAAGAATGCCTACAAAATATTGGTCGAAGTTCTTGCTCCTGCTCCTATTTATTGGACAGCAACCCTTATAGTAACAATTACATGCATTCTTCCTTATCTTGTTCACATATCTCTCCAAAGATGTTTCAATCCAATGGATCATCACATTATTCAAGAAATTAAGTACTATAGGAAGGACATTGAAGATCAACGCATGTGGAAGACCGAGCGGTTTAAAGCAAGACATGAAACACAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATGAGACAATTGAGAGGGAAGCTGCAGAGGAAGTCAACTTGTGCTGGACCTTTGTCACCTTCCTATACACAAAAATAA 3681 0.4127 MPRGRIRAKLRRSHLYTFGCVRPTTTDELPNPLHGPGFSRTVYCNQPQIHDKSSLLYCRNNVSTTKYNIITFFPKALFEQFRRVANIYFLLAACLSVSSISPFSPVSMIAPLGFVVGLSMAKEALEDFRRFLQDVKVNGRKAGIHKGDGVFGPRAWQNIMVGDIIKVEKDQFFPSDLLLLSSSYEDGICYVETMNLDGETNLKVKRCLEATLSLDSDEAFKGFSGTIHCEDPNPNLYTFVGNFEYENQVYALDPSQILLRDSKLRNTDYVYGVAIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISIISSIGFVVKTKYQVSKWWYLRPDNIEDQYDPQRIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINKDIYMYDEATGTPANARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRASEVELAAAKQMTSDIEENYSDLSNIPVSKSNTPSKKVTAGEEIVLESIVTSKDDEDQKPPIKGFGFEDNRLMNGNWLNEPNSDVLLMYFRILAVCHTAIPELNEDTDSITYEAESPDEGAFLVAAKEFGFEFYRRTQSTVVVHERLAASGQVVEREYKILNLLDFTSKRKRMSVIARDEEGNIILFCKGADSIIFDRLSKNGKLYLEATTKHLNEYGEAGLRTLALAYRKLDEQEFSDWDNEFQKAKTAVGPDREAMLEQLSDGIERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITLPNSDSLTNDSKEVIKSNILKQISNASQMILFEKDPHAAFALIIEGKTLTYALEDDVKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTRKTALAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAYAGFSGQSVYEDWYMILFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYTSLVTFFLIIIIFYDQAFRVDGQTADMDAVGTIMFTCIICTVNCQIALTMSHFTWIQHLFVWGSVVTWYLFLLLYGMLSPVYSKNAYKILVEVLAPAPIYWTATLIVTITCILPYLVHISLQRCFNPMDHHIIQEIKYYRKDIEDQRMWKTERFKARHETQIGFTARVEAKMRQLRGKLQRKSTCAGPLSPSYTQK 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1088 1226 Gene3D - 718 919 IPR023214 -
Lal10g1088 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1214 - -
Lal10g1088 1226 Gene3D - 123 288 - -
Lal10g1088 1226 Gene3D - 419 431 IPR023214 -
Lal10g1088 1226 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lal10g1088 1226 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Lal10g1088 1226 SFLD p-type atpase 405 930 IPR044492 -
Lal10g1088 1226 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 851 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal10g1088 1226 CDD P-type_ATPase_APLT_Dnf-like 59 1038 - -
Lal10g1088 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 685 IPR023299 GO:0000166
Lal10g1088 1226 Gene3D - 589 698 IPR023299 GO:0000166
Lal10g1088 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Lal10g1088 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Lal10g1088 1226 Gene3D - 432 464 IPR023299 GO:0000166
Lal10g1088 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1152 IPR023298 -
Lal10g1088 1226 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Lal10g1088 1226 Pfam Cation transport ATPase (P-type) 544 649 - -
Lal10g1088 1226 SFLD Haloacid Dehalogenase 405 930 - -
Lal10g1088 1226 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Lal10g1088 1226 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1214 - -
Lal10g1088 1226 SUPERFAMILY HAD-like 417 934 IPR036412 -
Lal10g1088 1226 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1088 Lal-Chr10 17779438 17785666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1088 1 1214 Primary Pumps ATPases AT1G17500 73.909 0.0 1893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1088 K01530 - gmx:100778710 2088.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0338 25 2310847 2317773 Lal10g1088 10 17779438 17785666 LSH
Lal10g1088 10 17779438 17785666 Lal8g0291 8 1963333 1970186 LSH
Lal10g1088 10 17779438 17785666 Lal1g1370 1 15578351 15585726 PCT
Lal1g1370 1 15578351 15585726 Lal10g1088 10 17779438 17785666 PCT