Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1079 ATGGAAGCTCCAGGTAGGTCAGTTGAAGAAATCTTCGAAGATTTCAAAGGCCGTAGAACTGCCATCATCAAAGCCCTTACCACTGATGTTGTTGATTTCTACACCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGGTTACCTAATGAGCACTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGACAAAGACTGGTTGTCTTTAGTTGCTGTTCATAGCGATAGTTGGTTGCTTGCCCTTGCCTTCTATTTTGGAGCCAGATTTGGTTTCGACAAAGCTGACAGGAGACGACTATTCAATATGATGAATGAACTACCAACAATATTTGAAGTTGTCACTGGTACTGCAAAGAAACAAGTTAAGGAGAAGTCTTTGGTTTCAAATAACAGTGGCAGCAAATCCAAGTCCAGCTCTAAAGCGCGAGCTGCTGAGGCTCAGGGTAGGCCGTCAAAGGAATTGCAACCAAAAGATGAGGATGAAGTAGTGGAAGAGCAAGATGAAGATGAGCATGGGGACACCTTGTGTGGGGCATGTGGTGAGAATAACGGTACCGACGAATTCTGGATTTGCTGTGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCTAGGGCAGACCATATCAAGCATTACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAA 750 0.452 MEAPGRSVEEIFEDFKGRRTAIIKALTTDVVDFYTQCDPEKENLCLYGLPNEHWEVNLPVEEVPPELPEPVLGINFARDGMQDKDWLSLVAVHSDSWLLALAFYFGARFGFDKADRRRLFNMMNELPTIFEVVTGTAKKQVKEKSLVSNNSGSKSKSSSKARAAEAQGRPSKELQPKDEDEVVEEQDEDEHGDTLCGACGENNGTDEFWICCDICERWFHGKCVKITPARADHIKHYKCPSCSSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1079 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Lal10g1079 249 MobiDBLite consensus disorder prediction 141 164 - -
Lal10g1079 249 Pfam PHD-finger 196 244 IPR019787 -
Lal10g1079 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Lal10g1079 249 MobiDBLite consensus disorder prediction 141 191 - -
Lal10g1079 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Lal10g1079 249 CDD PHD_AL_plant 195 245 IPR044104 -
Lal10g1079 249 SMART PHD_3 195 243 IPR001965 -
Lal10g1079 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Lal10g1079 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Lal10g1079 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Lal10g1079 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1079 Lal-Chr10 17747486 17751145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1079 6 249 Alfin-like Transcription Factor Family AT3G42790 73.361 2.43e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal10g1079 Alfin 9.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1079 - - gmx:100170696 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1508 17 16461772 16466748 Lal10g1079 10 17747486 17751145 ECH
Lal4g1532 4 19424366 19428781 Lal10g1079 10 17747486 17751145 ECH
Lal10g1079 10 17747486 17751145 Lal10g1079 10 17747486 17751145 ECH
Lal25g0350 25 2374991 2377996 Lal10g1079 10 17747486 17751145 LSH
Lal10g1079 10 17747486 17751145 Lal8g0296 8 1986896 1990757 LSH
Lal10g1079 10 17747486 17751145 Lal20g1047 20 14332126 14339713 PCT
Lal10g1079 10 17747486 17751145 Lal18g0134 18 1085727 1090731 PCT
Lal20g1047 20 14332126 14339713 Lal10g1079 10 17747486 17751145 PCT
Lal18g0134 18 1085727 1090731 Lal10g1079 10 17747486 17751145 PCT