Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1061 ATGGATTCGGAGGATGATATGCACGACGCCAACGACATGGAGTATCTGGATGACGATTTCTACAGTGGCGAAACCGAAGATGTTCCAATGGATTACTACAGTGACTACGATGATGACGCCGATGATTACTTCGACAACGGTGATGATTCCGGTAGGTTTGAGTCTCGTCGCACTGAGCAAAATTTCACCATATTGAAGGAATCGGATATCCAGCAAAGGCAGGAAGATGACATCAATAGAGTAGCTGCAGTTCTTTCCATATCACGGGTTTCTGCAAGCATCCTACTTCGTCATTACAATTGGAGTGTCACTAAAGTTCATGATGCATGGTTTGCTGATGAAGATCGAGTCCGGAAGACAGTTGGTTTGTTGGAGAAACCTGTTGTCCAGCATGCCAAGACTACAGAGCTTACTTGCGGGATCTGTTTTGAAACCTATCCTCGTGTCCGGATCGAAACTGCTTCCTGCGGTCATCCCTACTGTATTTCATGCTGGGAAGGTTATATTAGCACATCAATTAAAGACGGTCCTGGATGTTTGACGCTGAGATGTCCTGATCCCACTTGTGCTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGTATCAGATGAGGATAAAGAGAAACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCGGTCAGTTTTGGTGCTGGCAATGGAAATTATGATGTATCTTGCCTCTGCTCATATATGCATTGAGGAGGCTCACCGTCCGGTGGATTGTGGCACTGTAGCAAAGTGGATTTTGAAAAACAGTACAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAACCAAGGATGCATGCACATGACTTGTACACCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCGTGCAACCGTTATGAGACAGCTAAACAAGAAGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCACGGCAAAAAGCTCTTTCAGATCTGCACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATTACCGAGGCCTGGCTACAGATAGTTGAATGCAGACGGGTGCTGAAGTGGACGTATGCATATGGATACTATTTACCTGAGCATGAACGTGCTAGAAAACAGTTCTTTGAGTACCTGCAAGGTGAGGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAGGTATTCCTCGATGATGAAGACCCATCAAGAGAATTCAATGACTTCCGCACAAAACTAGCTGGATTGACCAGTGTAACTAGAAACTACTTTGAAAATCTAGTTGAGGCATTAGAGAATGGGTTATCTGATGTGTATAGTAATGGAGCTAATTCCAGCAAAACAACAAGCTCAAAAAATGCTGCCGGGAGCAGTAAGAGAGTTGGAAGAGGAAAGGGAACTATTCGAGCTAGCATGTCCAATAGAATGACTGATGATAATCTTTGGTCCTGTGAGCATTGTACCTACGCAAATGCCAAATCTGCAACTACATGCCAGATGTGCAATCAACAGCGTCCATGA 1710 0.4415 MDSEDDMHDANDMEYLDDDFYSGETEDVPMDYYSDYDDDADDYFDNGDDSGRFESRRTEQNFTILKESDIQQRQEDDINRVAAVLSISRVSASILLRHYNWSVTKVHDAWFADEDRVRKTVGLLEKPVVQHAKTTELTCGICFETYPRVRIETASCGHPYCISCWEGYISTSIKDGPGCLTLRCPDPTCAAAVGQDMINLLVSDEDKEKPSGVLLQVVNMRSVLVLAMEIMMYLASAHICIEEAHRPVDCGTVAKWILKNSTESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERARKQFFEYLQGEAESGLERLHQCAEKELQVFLDDEDPSREFNDFRTKLAGLTSVTRNYFENLVEALENGLSDVYSNGANSSKTTSSKNAAGSSKRVGRGKGTIRASMSNRMTDDNLWSCEHCTYANAKSATTCQMCNQQRP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1061 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 218 IPR013083 -
Lal10g1061 569 MobiDBLite consensus disorder prediction 505 535 - -
Lal10g1061 569 ProSiteProfiles Zinc finger RanBP2 type profile. 541 569 IPR001876 -
Lal10g1061 569 Pfam Ariadne domain 337 502 IPR045840 -
Lal10g1061 569 Pfam IBR domain, a half RING-finger domain 267 315 IPR002867 -
Lal10g1061 569 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Lal10g1061 569 SUPERFAMILY Ran binding protein zinc finger-like 541 568 IPR036443 -
Lal10g1061 569 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Lal10g1061 569 ProSitePatterns Zinc finger RanBP2-type signature. 545 564 IPR001876 -
Lal10g1061 569 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 238 517 - -
Lal10g1061 569 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 209 - -
Lal10g1061 569 SMART zf_4 543 567 IPR001876 -
Lal10g1061 569 SUPERFAMILY RING/U-box 135 215 - -
Lal10g1061 569 MobiDBLite consensus disorder prediction 1 32 - -
Lal10g1061 569 Gene3D - 246 501 - -
Lal10g1061 569 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 209 IPR031127 GO:0004842|GO:0016567
Lal10g1061 569 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 238 517 IPR031127 GO:0004842|GO:0016567
Lal10g1061 569 ProSiteProfiles TRIAD supradomain profile. 135 328 IPR044066 -
Lal10g1061 569 Gene3D - 539 569 - -
Lal10g1061 569 SUPERFAMILY RING/U-box 269 317 - -
Lal10g1061 569 MobiDBLite consensus disorder prediction 505 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1061 Lal-Chr10 17628152 17636128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1061 17 568 ARIADNE family AT1G65430 62.906 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1061 K11968 - gmx:100810427 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0376 25 2509417 2521006 Lal10g1061 10 17628152 17636128 LSH
Lal10g1061 10 17628152 17636128 Lal8g0315 8 2111474 2118469 LSH
Lal10g1061 10 17628152 17636128 Lal1g0289 1 1713368 1719496 PCT
Lal10g1061 10 17628152 17636128 Lal2g0183 2 1076480 1082755 PCT
Lal10g1061 10 17628152 17636128 Lal9g0186 9 1154214 1160587 PCT
Lal1g0289 1 1713368 1719496 Lal10g1061 10 17628152 17636128 PCT
Lal2g0183 2 1076480 1082755 Lal10g1061 10 17628152 17636128 PCT
Lal9g0186 9 1154214 1160587 Lal10g1061 10 17628152 17636128 PCT